View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_high_43 (Length: 422)
Name: NF13254_high_43
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 31396184 - 31396488
Alignment:
| Q |
10 |
attattcttcgttcttctttctcttcctcaaatattacacaagaaactaggtgtgtaattggactcgatgaacgtgtagtcattcaagttgattcacaac |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31396184 |
attattctttgttcttctttctcttcctcaaatattacacaagaaactaggtgtgtaattggactcgatgaacgtgtagtcattcaagttgattcacaac |
31396283 |
T |
|
| Q |
110 |
aacaagaaaatccgattagaggtttcaacattaagcaacagttcttttcttgtatgaatgaacttaagaaaaacaattcgaatattggtaagatgctttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31396284 |
aacaagaaaatccgattagaggtttcaacattaagcaacagttcatttcttgtatgaatgaacttaagaaaaacaattcgaatattggtaagatgctttt |
31396383 |
T |
|
| Q |
210 |
gcaaaaggttaaaggtaactataaattggttatgactgaccacaatttcataattgattcacttttgcctgaaacaattaataaccttcttaacacggtg |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31396384 |
gcaaaagcttaaaggtaactataaattggttatgactgaccaaaatttcataattgattcacttttgcctgaaacaattaataaccttcataacacggtg |
31396483 |
T |
|
| Q |
310 |
aaatt |
314 |
Q |
| |
|
||||| |
|
|
| T |
31396484 |
aaatt |
31396488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 31402144 - 31402240
Alignment:
| Q |
310 |
aaattgatggtggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggttggaagacttgttaataaataaattat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31402144 |
aaattgatggtggattctggatttgagaaagagtgctatgagatttacaacagttaccgtaaggaatggttggaagacttgttaataaataaattat |
31402240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 406
Target Start/End: Complemental strand, 31416067 - 31415819
Alignment:
| Q |
158 |
cttgtatgaatgaacttaagaaaaacaattcgaatattggtaagatgcttttgcaaaaggttaaaggtaactataaattggttatgactgaccacaattt |
257 |
Q |
| |
|
|||||||||| || |||||| | |||||||| ||||||| || | | ||||| | ||||| ||||| ||| ||||||||| ||||||| ||||| || |
|
|
| T |
31416067 |
cttgtatgaacgagcttaagcagaacaattcaaatattgccaataagtttttggagaaggtaaaagggaacggtaaattggtagtgactgatcacaactt |
31415968 |
T |
|
| Q |
258 |
cataattgattcacttttgcctgaaacaattaataaccttcttaacacggtgaaattgatggtggattctggatttgagaaagagtgctatgagatttac |
357 |
Q |
| |
|
|||||||||| | || ||||||||| ||| | |||| ||| || |||||| ||||||||||| |||| |||||||| ||||||| ||| | ||| |
|
|
| T |
31415967 |
cataattgatgccctgccaaatgaaacaatcaatcatcttcataaaaccgtgaaaatgatggtggatgctgggtttgagaaggagtgctctgatttgtac |
31415868 |
T |
|
| Q |
358 |
aacagttaccgtaaggaatggttggaagacttgttaataaataaattat |
406 |
Q |
| |
|
| |||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
31415867 |
attagtttgcgtaaagaatggttggaagatttgttaataaataaattat |
31415819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 31416212 - 31416165
Alignment:
| Q |
10 |
attattcttcgttcttctttctcttcctcaaatattacacaagaaact |
57 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
31416212 |
attattcttcggtcttcattctcttccttaaatgttacacaagaaact |
31416165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 31493798 - 31493751
Alignment:
| Q |
10 |
attattcttcgttcttctttctcttcctcaaatattacacaagaaact |
57 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
31493798 |
attattcttcggtcttctttctcttccttaaatgttacagaagaaact |
31493751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 162 - 406
Target Start/End: Original strand, 8034288 - 8034529
Alignment:
| Q |
162 |
tatgaatgaacttaagaaaaacaattcgaatattggtaagatgcttttgcaaaaggttaaaggtaactataaattggttatgactgaccacaatttcata |
261 |
Q |
| |
|
||||||||| | ||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||| ||| ||| | ||| |
|
|
| T |
8034288 |
tatgaatgagcataataaaaacaattccaatattggtaacatgcttttgcaaatggtgaaaggtaactataaattggttgtgacgaaccgcaagcttata |
8034387 |
T |
|
| Q |
262 |
attgattcacttttgcctgaaacaattaataaccttcttaacacggtgaaattgatggtggattctggatttgagaaagagtgctatgagatttacaaca |
361 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8034388 |
attgatgcacttttgcctgaaacaa---ataactttcatgaaacggtgaaattgatggtggattctggatttgagaaagagtgctatgagatttacgaca |
8034484 |
T |
|
| Q |
362 |
gttaccgtaaggaatggttggaagacttgttaataaataaattat |
406 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8034485 |
gttactgtaaggaatggttggaagacttattcataaataaattat |
8034529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 162 - 386
Target Start/End: Original strand, 8039700 - 8039921
Alignment:
| Q |
162 |
tatgaatgaacttaagaaaaacaattcgaatattggtaagatgcttttgcaaaaggttaaaggtaactataaattggttatgactgaccacaatttcata |
261 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| |||||||||| ||| |||| ||| || || |
|
|
| T |
8039700 |
tatgaaggaacataagaaaaacaattccaatattggtaacatgcttttgcaaatggtgaaaggtaactgtaaattggttgtgatggaccgcaagctcgta |
8039799 |
T |
|
| Q |
262 |
attgattcacttttgcctgaaacaattaataaccttcttaacacggtgaaattgatggtggattctggatttgagaaagagtgctatgagatttacaaca |
361 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8039800 |
attgatgcacttttgcctgaaacaa---ataactttcatgaaacggtgaaattgatggcggattctggatttgagaaagagtgctatgagatttacaaca |
8039896 |
T |
|
| Q |
362 |
gttaccgtaaggaatggttggaaga |
386 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
8039897 |
gttactgtaaggaatggttggaaga |
8039921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University