View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_44 (Length: 414)
Name: NF13254_high_44
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 398
Target Start/End: Complemental strand, 32705239 - 32704864
Alignment:
| Q |
23 |
atgtgtgtggtagtgtttcatgggtcctagatcacttagggagtggttttcagtgtcacttaaattttaccatatatcttgcagcttaagcaataaacca |
122 |
Q |
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| T |
32705239 |
atgtgtgtggtagtgtttcatgggtcctagatcacttagggagtggttttcagtgtcacttaaactttaccatatatcttgcagcttaagcaataaacca |
32705140 |
T |
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| Q |
123 |
aacattccacattaactatttgttgttataaaaatcaggttaaagaagagcttcagagtaatggtagtcaaataataactaattgcgaggtggatttcgt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32705139 |
aacattccacattaactatttgttgttataaaaatcaggttaaagaagagcttcagagtaatggtagtcaaataataactaattgcgaggtggattttgt |
32705040 |
T |
|
| Q |
223 |
ttcatcatctgaaaaaggtgagtaagtaatctcagttctcaacccttgttactcttttaattccttccccttaagaaaaggaaagtaaatttactactgt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32705039 |
ttcatcatctgaaaaaggtgagtaagtaatctcagttctcaacccttgttactcttttaattccttccccttaagaaaaggaaagtaaatttaatactgt |
32704940 |
T |
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| Q |
323 |
ttaagtaacaactattgaaacaatttcgcaggatgtgttgtttacggcaaagatggttctgaagaagtggatgatg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32704939 |
ttaagtaacaactattgaaacaatttcgcaggatgtgttgtttacggcaaagatggttctgaagaagtgtatgatg |
32704864 |
T |
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