View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_46 (Length: 406)
Name: NF13254_high_46
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_46 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 216 - 406
Target Start/End: Original strand, 23251491 - 23251681
Alignment:
| Q |
216 |
aaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaa |
315 |
Q |
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| T |
23251491 |
aaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaa |
23251590 |
T |
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| Q |
316 |
tgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatg |
406 |
Q |
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| T |
23251591 |
tgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatg |
23251681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 23251276 - 23251453
Alignment:
| Q |
39 |
aaagtcctacaaaagagaagagaagaataagacaagagacaccgtattacctccttcaacttaatacaggctaagcaaagatggcaatagattatatttt |
138 |
Q |
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| T |
23251276 |
aaagtcctacaaaagagaagagaagaataagacaagagacaccgtattaccttcttcaacttaatacaggctaagcaaagatggcaatagattatatttt |
23251375 |
T |
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| Q |
139 |
ctatatcaatagctgaaattccaaaattatattttctttcatatataataaaaaggatgagatgcactttacgcttga |
216 |
Q |
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| T |
23251376 |
ctatatcaatagctgaaattccaaaattatattttctttcatatataataaaaaggatgagatgcactttacgcttga |
23251453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 215 - 406
Target Start/End: Original strand, 23257464 - 23257654
Alignment:
| Q |
215 |
gaaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataa |
314 |
Q |
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| T |
23257464 |
gaaactccttttcaatttcaacctatgtatatgcagaatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataa |
23257563 |
T |
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| Q |
315 |
atgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatg |
406 |
Q |
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| T |
23257564 |
a-attaaaccaaacacattaagtttagaagttccatagtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatg |
23257654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 399
Target Start/End: Original strand, 23247079 - 23247262
Alignment:
| Q |
215 |
gaaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataa |
314 |
Q |
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| T |
23247079 |
gaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctatcctacaatccaaaaagaa |
23247178 |
T |
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| Q |
315 |
atgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatact |
399 |
Q |
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| T |
23247179 |
aagt-aaacaaaagacattaaatttaaaagttccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatact |
23247262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 23265846 - 23266001
Alignment:
| Q |
39 |
aaagtcctacaaaagagaagagaagaataagacaagagacaccgtattacctccttcaactta--atacaggctaagcaaagatggcaatagattatatt |
136 |
Q |
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| T |
23265846 |
aaagtcctacaaaagagaagagaagaataagacaagagacgctatattacctctttcaacttataatgcaagctaagcaaggatggcaatagattatatt |
23265945 |
T |
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| Q |
137 |
ttctatatcaatagctgaaattccaaaattatatt-ttctttcatatataataaaa |
191 |
Q |
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| T |
23265946 |
ttctatatcaaaagctgaaattccaaagttatattcttctttcatatataataaaa |
23266001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 253 - 406
Target Start/End: Original strand, 23266063 - 23266215
Alignment:
| Q |
253 |
tttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatgtaaaaccaaatcaattaaatttaaaagttccatag |
352 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||| |
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| T |
23266063 |
tttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaa-gttaaaccaaacaaagaaaatttagaagttccatag |
23266161 |
T |
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| Q |
353 |
tgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatg |
406 |
Q |
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| T |
23266162 |
tgatacctcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatg |
23266215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 23283160 - 23283284
Alignment:
| Q |
275 |
ttgtagtatagacatttcctattctacaatccaaaaataaatgtaaaaccaaatcaattaaatttaaaagttccatagtgatacctcatcatcttgaaag |
374 |
Q |
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||||||||||||||||| | ||||||||||||||||| ||| ||||||||| | || |||| ||||||||||| |||||||| |||||||||||| |
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| T |
23283160 |
ttgtagtatagacattttcaattctacaatccaaaaaaaaaaacaaaaccaaactcttcaattttagaagttccatagggatacctcttcatcttgaaag |
23283259 |
T |
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| Q |
375 |
tcttgtatatgaatatcttcatact |
399 |
Q |
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| T |
23283260 |
tcttgtaaatcaaaattttcatact |
23283284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 23246837 - 23246898
Alignment:
| Q |
40 |
aagtcctacaaaagagaagagaagaataagacaagagacaccgtattacctccttcaactta |
101 |
Q |
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||||||||||||||||||||||| | |||||||||| |||| | ||||||||| ||||||| |
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| T |
23246837 |
aagtcctacaaaagagaagagaaaattaagacaagatacactattttacctcctacaactta |
23246898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 23246979 - 23247032
Alignment:
| Q |
154 |
aaattccaaaattatatt-ttctttcatatataataaaaaggatgagatgcact |
206 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |||||||||||| |
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| T |
23246979 |
aaattccaaaattatattcttttttcatatataataaaagtcatgagatgcact |
23247032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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