View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_5 (Length: 722)
Name: NF13254_high_5
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_5 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 145 - 545
Target Start/End: Original strand, 20981928 - 20982329
Alignment:
| Q |
145 |
acccaacatacataaagagaactcaataactaaacttttgtaaatatatccaaggaaaataannnnnnnn-aacaagaaaaacgcatatatatttaacaa |
243 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20981928 |
acccaacatacataaagagaactcaacaactaaacttttgtaaatatatccaaggaaaataatttttttttaacaagaaaaacgcatatatatttaacaa |
20982027 |
T |
|
| Q |
244 |
ctaaaaaattagtcttaattattatgtcacattttatcttaactataacgtgttaatattctgtttgtgtgttacctttattaagtaattcattgcttgg |
343 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20982028 |
ctaaaaaattagtcttaattattatgacacattttatcttaactataacgtgttaatattctgtttgtgttttacctttattaagtaattcattgcttgg |
20982127 |
T |
|
| Q |
344 |
tgattgtaatttgtatttgttcccattgcatagagttgagatattattatgtgacatatagttaaggtcctagtaatatttcatatgtggttcaaattgg |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20982128 |
tgattgtaatttgtatttgttcccattgcatagagttgagatattattatgtgacatatagttaaggtcctagtaatatttcatatgtggttcagattgg |
20982227 |
T |
|
| Q |
444 |
attatatgccagcgttatgacttcgatgatgggcaaactgtaagtacttcggcaagtgttctctgagttttgaggtctactccgactttggtgagctctg |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20982228 |
attatatgccagcgttatgacttcgatgatgggcaaactgtaaatacttctgcaagtgttctctgagttttgaggtctactccgactttggtgagctctg |
20982327 |
T |
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| Q |
544 |
ga |
545 |
Q |
| |
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|| |
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|
| T |
20982328 |
ga |
20982329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 638 - 711
Target Start/End: Original strand, 20982601 - 20982674
Alignment:
| Q |
638 |
tatttgtcgttagtactttcaatttcaagttttatatacttgacaatgaaattcgtcaaagtagaaataatatt |
711 |
Q |
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| T |
20982601 |
tatttgttgttagtactttcaatttcaagttttatatacttgacaatgaaattcgtcaaagtagaaataatatt |
20982674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 711
Target Start/End: Original strand, 42054712 - 42054756
Alignment:
| Q |
667 |
ttttatatacttgacaatgaaattcgtcaaagtagaaataatatt |
711 |
Q |
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| T |
42054712 |
ttttatatacttgacaatgaaattcgtcgaagtggaaatattatt |
42054756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 49067342 - 49067295
Alignment:
| Q |
606 |
aattgaagaacagtgtgctgaggtaggtgatgtatttgtcgttagtac |
653 |
Q |
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||||||||||||||||||||||||||||| | ||||| || ||||||| |
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| T |
49067342 |
aattgaagaacagtgtgctgaggtaggtggtatatttttcattagtac |
49067295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 690
Target Start/End: Complemental strand, 53820 - 53790
Alignment:
| Q |
660 |
tttcaagttttatatacttgacaatgaaatt |
690 |
Q |
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| T |
53820 |
tttcaagttttatatacttgacaatgaaatt |
53790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 704
Target Start/End: Original strand, 19244 - 19281
Alignment:
| Q |
667 |
ttttatatacttgacaatgaaattcgtcaaagtagaaa |
704 |
Q |
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| T |
19244 |
ttttatatatttgacaatgaaattcgttaaagtagaaa |
19281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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