View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_high_54 (Length: 388)

Name: NF13254_high_54
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_high_54
NF13254_high_54
[»] chr3 (2 HSPs)
chr3 (15-379)||(36743868-36744237)
chr3 (131-163)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (69-168)||(6392095-6392194)
chr8 (33-168)||(6364472-6364607)
chr8 (33-168)||(7460671-7460806)
chr8 (33-165)||(6290510-6290642)
chr8 (33-168)||(6353599-6353734)
chr8 (82-168)||(6411259-6411345)
chr8 (92-168)||(6264930-6265006)
chr8 (92-168)||(6425289-6425365)
chr8 (92-168)||(6275755-6275831)
chr8 (53-168)||(6333183-6333298)
chr8 (53-168)||(6371303-6371418)
chr8 (140-178)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (94-174)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (155-277)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 36743868 - 36744237
Alignment:
Q  15 aattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743868 aattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagc 36743967  T
Q  115 aaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743968 aaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggt 36744067  T
Q  215 tcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctca 314  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744068 tcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctca 36744167  T
Q  315 act-----ttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgat 379  Q
    |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744168 actttttcttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgat 36744237  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  131 gacagaatctatgattatgatgtttacaatgat 163  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  69 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 168  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
Q  33 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 132  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  133 cagaatctatgattatgatgtttacaatgatttggg 168  Q
     ||||| |||||||||||||| ||||||||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
Q  33 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 132  Q
    |||||||||||  || ||  ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  133 cagaatctatgattatgatgtttacaatgatttggg 168  Q
    |||||| |||||||||||||| |||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
Q  33 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 132  Q
    |||||||||||  |||||  ||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  ||||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  133 cagaatctatgattatgatgtttacaatgattt 165  Q
     ||||| |||||||| ||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
Q  33 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 132  Q
    |||||||||||  |||||  || |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  133 cagaatctatgattatgatgtttacaatgatttggg 168  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  82 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 168  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  92 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 168  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  92 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 168  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  92 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 168  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
Q  53 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 152  Q
    ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||||    
T  6333298 ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg 6333199  T
Q  153 tttacaatgatttggg 168  Q
    |||||||||| |||||    
T  6333198 tttacaatgacttggg 6333183  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
Q  53 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 152  Q
    ||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||||    
T  6371418 ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg 6371319  T
Q  153 tttacaatgatttggg 168  Q
    | ||||||||||||||    
T  6371318 tctacaatgatttggg 6371303  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  140 tatgattatgatgtttacaatgatttgggaaatccagat 178  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  94 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 174  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  155 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 254  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  255 gaaaaccgaccaaaacaggttag 277  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

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