View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_58 (Length: 375)
Name: NF13254_high_58
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 28898633 - 28898283
Alignment:
| Q |
18 |
gttatgcttagcggaaagtgattgggcctaggcaggaagttggcattcatttgctgcttcttgtgatctttctgttgtttctttaatgttgtttctttcc |
117 |
Q |
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| T |
28898633 |
gttatgcttagtggaaagtgattgggcctaggcaggaagttggcattcatttgctgcttcttgtgatctttctgttgtttctttaatgttgtttgtttcc |
28898534 |
T |
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| Q |
118 |
attttctactggtgtactctaatatcacaatccgagttctacataatataccctttaatgttttattaggctaagaggatcactttcacttagctattta |
217 |
Q |
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| T |
28898533 |
attttctactggtgtactctaatatcacaatccgagttctacataatataccctttaatgttttattaggctaagaggatcactttcacttagctattta |
28898434 |
T |
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| Q |
218 |
caatctaatggtga---nnnnnnnnnnatgattttgttcctatatttgattcactaattgaggttcttcatataggaaaaagttaacgtgccactaattt |
314 |
Q |
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| T |
28898433 |
caatctaatggtgatttttttttttttatgattttgttcctatatttgattcactaattgaggttcttcatataggaaaaagttaacgtgccactaattt |
28898334 |
T |
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| Q |
315 |
cattaatgtttggaccaaatatgtgtaaaatgtagctcacaatattctgtg |
365 |
Q |
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| T |
28898333 |
cattaatgtttggaccaaatatgtgtaaaatgtagctcacaatattctgtg |
28898283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 28913041 - 28912794
Alignment:
| Q |
99 |
tttaatgttgtttctttccattttctactggtgtactctaatatcacaatccgagttctacataatataccctttaatgtttt-attaggct-aagagga |
196 |
Q |
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| T |
28913041 |
tttaatgttgtttatttccatttcctaccgatgtactccgatatcacagtccgagttcaatataatatatcctttaatgtttttattattttcaagagga |
28912942 |
T |
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| Q |
197 |
tcactttcacttagctatttacaatctaatggtgannnnnnnnnnatgattttgttcctatatttgattcactaattgaggttcttcatataggaaaaag |
296 |
Q |
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| T |
28912941 |
tcactttcactta----tttatgat-taatagtgatatttgtt--attattttgttcctatatttcattcactaattgaggttcttcacatagaaaaaag |
28912849 |
T |
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| Q |
297 |
ttaacgtgccactaatttcattaatgtttggaccaaatatgtgtaaaatgtagct |
351 |
Q |
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| T |
28912848 |
ttaacgtgccactagtttcatttaagtttttaccaagtatatgtaaaatgtagct |
28912794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 365
Target Start/End: Complemental strand, 28922461 - 28922236
Alignment:
| Q |
139 |
atatcacaatccgagttctacataatataccctttaatgttttattaggct-aagaggatcactttcacttagctatttacaatctaatggtgannnnnn |
237 |
Q |
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| T |
28922461 |
atatcacagtctgatttcaatataatatatcctttaatattttattatgctcaagaggatcactttcactta----tttataatctaattgtgatatttt |
28922366 |
T |
|
| Q |
238 |
nnnn-atgattttgttcctatatttgattcactaattgaggttcttcatataggaaaaa-gttaacgtgccactaatttcattaatgtttggaccaaata |
335 |
Q |
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|| ||||||||| ||||| |||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||| | |||| ||||| || |
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| T |
28922365 |
tttttattattttgttcatatatctgattcaccgattgaggttcttcacatagaaaaaaagttaacgtgccactaatttcatataagtttttaccaagta |
28922266 |
T |
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| Q |
336 |
tgtgtaaaatgtagctcacaatattctgtg |
365 |
Q |
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| T |
28922265 |
tgtgtaaaatgtatctcacaatatcctgtg |
28922236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 28888718 - 28888604
Alignment:
| Q |
251 |
ttcctatatttgattcactaattgaggttcttcatataggaaaaagttaacgtgccactaatttcattaatgtttggaccaaatatgtgtaaaatgtagc |
350 |
Q |
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||||||| |||||||||||||||||| ||||| | | | |||||||| ||||||||||||| |||||| ||| ||||| ||||| | ||||||||| |
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| T |
28888718 |
ttcctatgtttgattcactaattgagtttctttacacaaaaaaaagttcgtgtgccactaatttagttaatgattgtaccaagtatgtatgaaatgtagc |
28888619 |
T |
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| Q |
351 |
tcacaatattctgtg |
365 |
Q |
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||||||||| ||||| |
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| T |
28888618 |
tcacaatatcctgtg |
28888604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 28931470 - 28931382
Alignment:
| Q |
271 |
attgaggttcttcatataggaaaaagttaacgtgccactaatttcattaatgtttggaccaaatatgtgtaaaatgtagctcacaatat |
359 |
Q |
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| T |
28931470 |
attgaggttcttcacacaggagaaagttcatgtgccactaatttagttaatgtttctaccaagtatgtatagaatgcagctcacaatat |
28931382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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