View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_62 (Length: 367)
Name: NF13254_high_62
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 42096407 - 42096059
Alignment:
| Q |
4 |
gtttggctgtgttacatgggatatgtttcttaatggactactatttagtttagtttgcattcattaa-tattgaacttttgaggaatatcgttttaaaca |
102 |
Q |
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| T |
42096407 |
gtttggctgtgttacatgggatatgtttcttaatggactactatttagtttagtttgcattcattaaatattgaacttttgaggaatatcgttttaaaca |
42096308 |
T |
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| Q |
103 |
cattgagcttgatcacgaattagcatccagacacataaagtttaggtatggaagcacttgatgaatacatataaaaattacttttcatactccattggta |
202 |
Q |
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| T |
42096307 |
cattgagcttgatcacgaattagcatccagacacactaagtttaggtatggaagcacttgacgaatacatataaaaattacttttcatactccattggta |
42096208 |
T |
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| Q |
203 |
cctatataa---gtcaagctccacatttccattttacattacatttgataataaaaatcaagtaattaatcttctaaggctcatgaaaggaagattactc |
299 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42096207 |
cctatataataagtcaagctccacatttccattttacattacatttgataataaaaatcaagtaattaatcttctaaggctcatgaaaggaagattactc |
42096108 |
T |
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| Q |
300 |
aagctttctttgatggtcctgatgaaccttgttctttacatggctagca |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42096107 |
aagctttctttgatggtcctgatgaaccttgttctttacatggctagca |
42096059 |
T |
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