View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_63 (Length: 367)
Name: NF13254_high_63
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 50968952 - 50969291
Alignment:
| Q |
20 |
aaaacacaacaaaagaacgaatatacatataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggta |
119 |
Q |
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| T |
50968952 |
aaaacgcaacaaaagaacgaatatacatataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggta |
50969051 |
T |
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| Q |
120 |
atcaatgagcagaggtatatatctttttacatattatatatgaggctgcaagcttagaaattaggttaggtttatctcaaccctaatattatatccgaga |
219 |
Q |
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| T |
50969052 |
atcaatgagcagaggtatatatctttttacatattatatatgaggctgcaagcttagaaattaggttaggtttatctcaaccctaatattatatccgaga |
50969151 |
T |
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| Q |
220 |
gagagtgagacgatggggtttattttttgacaaggttgatgcatggggttaagaaactagggttggtttggtttaattaatttttaaccattaccaaaac |
319 |
Q |
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| T |
50969152 |
gagagtgagacgatggggtttattttttgacaaggttgatgcatggggttaagagactagggttggtttggtttaattaatttttaaccattaccaaaac |
50969251 |
T |
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| Q |
320 |
aaggtgatatggaatcaatcaatcaaattgggagtataat |
359 |
Q |
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| T |
50969252 |
aaggtgatatggaatcaatcaatcaatttgggagtataat |
50969291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 50973808 - 50973989
Alignment:
| Q |
48 |
ataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggtaatcaatgagca-gaggtatatatctttt |
146 |
Q |
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| T |
50973808 |
atacccgtagttaaaacaaactaacggcaccatttgtctacgttgaagaaatatgaatctttgcgaaaggtaattaaggagcataaggtatctatccttt |
50973907 |
T |
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| Q |
147 |
tacatattatatatgaggctgcaagcttagaaattaggttaggttta--tctcaaccctaatattatatccgagagagagtg |
226 |
Q |
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| T |
50973908 |
cacatattatatctgcggcggcaagcttagaaactaggttaggtctatttctcaaccctaatattatatctgagagaaagtg |
50973989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 50974009 - 50974072
Alignment:
| Q |
219 |
agagagtgagacgatggggtttattttttgacaaggttgatgcatggggttaagaaactagggtt |
283 |
Q |
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| T |
50974009 |
agagagtgagacggtggggtttattttttgacaagg-tgaggcgtggagttaagaaactagggtt |
50974072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 50974071 - 50974110
Alignment:
| Q |
303 |
ttaaccattaccaaaacaaggtgatatggaatcaatcaat |
342 |
Q |
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| T |
50974071 |
ttaaccattaccaaaacaaggtgatacggaattaatcaat |
50974110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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