View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_high_67 (Length: 342)

Name: NF13254_high_67
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_high_67
NF13254_high_67
[»] chr6 (1 HSPs)
chr6 (152-327)||(24998891-24999065)
[»] chr2 (1 HSPs)
chr2 (106-289)||(38979700-38979883)
[»] chr3 (2 HSPs)
chr3 (106-289)||(51423942-51424126)
chr3 (153-289)||(11685962-11686097)
[»] chr8 (2 HSPs)
chr8 (153-289)||(8211560-8211695)
chr8 (106-289)||(9289755-9289939)
[»] scaffold0442 (1 HSPs)
scaffold0442 (106-289)||(13036-13222)
[»] chr4 (3 HSPs)
chr4 (153-289)||(7055248-7055384)
chr4 (106-289)||(14463069-14463253)
chr4 (106-142)||(7055398-7055434)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 152 - 327
Target Start/End: Original strand, 24998891 - 24999065
Alignment:
Q  152 cccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatata 251  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  24998891 cccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtg-cttttttggttaatcctctatgtgcaacagttagagtatatata 24998989  T
Q  252 tgcaagttatgctttgaagagttcttatgttaattttannnnnnnaataatgacagtgttcttttatatccacagg 327  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  24998990 tgcaagttatgctttgaagagttcttatgttaattttatttttttaataatgacagtgttcttttatatccacagg 24999065  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 38979700 - 38979883
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgt 205  Q
    ||||||||||||| ||||||||||||||||||||||| |        ||||||||||||||||| ||||   |||||||||| |||||||||| ||||||    
T  38979700 atatagtagaagtagcttcatagatgttgtattttatagtgttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgt 38979799  T
Q  206 ggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 289  Q
    |         |||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  38979800 gtttttttttgttaatcctctaggtgcgacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 38979883  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 51423942 - 51424126
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 203  Q
    ||||||||||||| |||||||||||||| ||||||||  ||        ||||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  51423942 atatagtagaagtggcttcatagatgttttattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 51424041  T
Q  204 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 289  Q
    |||        ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  51424042 gtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 51424126  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 11685962 - 11686097
Alignment:
Q  153 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 252  Q
    ||||||||||||||||| ||||  | || |||||| ||||||||||||||||||        ||||||||||||| |||||| ||||||||||| |||||    
T  11685962 ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaagagttagagtatgtatat 11686060  T
Q  253 gcaagttatgctttgaagagttcttatgttaatttta 289  Q
    |||||||||||||||| || |||||||||||||||||    
T  11686061 gcaagttatgctttgatgatttcttatgttaatttta 11686097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 8211560 - 8211695
Alignment:
Q  153 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 252  Q
    ||||||||||||||||| ||||    || |||||| ||||||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |    
T  8211560 ccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatct 8211658  T
Q  253 gcaagttatgctttgaagagttcttatgttaatttta 289  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8211659 gcaagttatgctttgatgagttcttatgttaatttta 8211695  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 9289755 - 9289939
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 203  Q
    ||||||||||||| |||||||||||||| ||||||||  ||         |||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  9289755 atatagtagaagtggcttcatagatgttttattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 9289854  T
Q  204 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 289  Q
     ||        ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||    
T  9289855 atg-tttttttggttaatcctctaggtgcaacagttagagtttgtatctgcaagttatgctttgatgagttcttatgttaatttta 9289939  T

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Target: scaffold0442 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 106 - 289
Target Start/End: Complemental strand, 13222 - 13036
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc----ccttatatgcatttgaactccttaggaatgaattatattaccatcatga 201  Q
    ||||||||||||| ||||||||||||||||||||||| |            ||||||||||||||||| ||||  | || |||||| |||||||||| ||    
T  13222 atatagtagaagtggcttcatagatgttgtattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacga 13123  T
Q  202 atgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 289  Q
    |||||        | |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13122 atgtgttatttttg-ttaatcatctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 13036  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 7055384 - 7055248
Alignment:
Q  153 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 252  Q
    ||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||         |||||||||||| ||||| ||||||| |||| ||| |    
T  7055384 ccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtgcagcagttagcgtatgtatct 7055285  T
Q  253 gcaagttatgctttgaagagttcttatgttaatttta 289  Q
     ||||||||||||||| ||||||||||||||||||||    
T  7055284 tcaagttatgctttgatgagttcttatgttaatttta 7055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 289
Target Start/End: Complemental strand, 14463253 - 14463069
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc-ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatg 204  Q
    ||||||||||||| ||||||||||||||||||||||| |         |||||||| |||||||| ||||  |||| |||||| |||||||||| |||||    
T  14463253 atatagtagaagtggcttcatagatgttgtattttatagtgtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatg 14463154  T
Q  205 tggnnnnnnng---gttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 289  Q
    ||            |||||||||||| ||||||||||||||   | ||| ||||||||||||||||| |||||||||||| |||||||    
T  14463153 tgttttttttttttgttaatcctctaggtgcaacagttaga---tgtatctgcaagttatgctttgatgagttcttatgtcaatttta 14463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 7055434 - 7055398
Alignment:
Q  106 atatagtagaagttgcttcatagatgttgtattttat 142  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7055434 atatagtagaactggcttcatagatgttgtattttat 7055398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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