View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_69 (Length: 338)
Name: NF13254_high_69
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 11640186 - 11640506
Alignment:
| Q |
2 |
gcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttaataattaattat |
101 |
Q |
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| T |
11640186 |
gcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttaataattaattat |
11640285 |
T |
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| Q |
102 |
atacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatcta |
201 |
Q |
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| T |
11640286 |
atacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatcta |
11640385 |
T |
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| Q |
202 |
cggcatgctgatttatcaaagatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaa |
301 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11640386 |
cggcgtgttgatttatcaaagatattttaaaaatacctgatttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaa |
11640485 |
T |
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| Q |
302 |
cacctaccggttagtgcttct |
322 |
Q |
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| T |
11640486 |
cacctaccggttagtgcttct |
11640506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 11621724 - 11622008
Alignment:
| Q |
22 |
cttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattatatacaatacatgctcaatg |
120 |
Q |
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| T |
11621724 |
cttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaata |
11621823 |
T |
|
| Q |
121 |
cacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcatgctgatttatcaa |
220 |
Q |
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| T |
11621824 |
cacaaattagaactatattcatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcag |
11621923 |
T |
|
| Q |
221 |
agatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaacaccta |
307 |
Q |
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| T |
11621924 |
agata--ttaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta |
11622008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 11605845 - 11605768
Alignment:
| Q |
23 |
ttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
99 |
Q |
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| T |
11605845 |
ttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
11605768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 14484668 - 14484602
Alignment:
| Q |
34 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
99 |
Q |
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| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaatt |
14484602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33735417 - 33735483
Alignment:
| Q |
34 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
99 |
Q |
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| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
33735483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 53807338 - 53807378
Alignment:
| Q |
92 |
aattaattatatacaatacatgctcaatgcacaaattaaaac |
133 |
Q |
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| T |
53807338 |
aattaattatatacaat-catgttcaatgcacaaattaaaac |
53807378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 49510362 - 49510305
Alignment:
| Q |
137 |
aatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaacctta |
194 |
Q |
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| T |
49510362 |
aatcatatattagtgtagaagtcaaataaacatatgagcatgcatatctacaatctta |
49510305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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