View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_70 (Length: 336)
Name: NF13254_high_70
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 23410954 - 23411245
Alignment:
| Q |
17 |
agaaggaaatagaaacattcctcagaaaactttccttagtcgccatagccatagcttcactaacactcctcattctcttcctccaaacccctaacacctg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |
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| T |
23410954 |
agaaggaaatagaaacattcctcagaaaactttccttagtcgccatagccatagcttcactaacactcctcattctcttcctccaaatccccaacacccg |
23411053 |
T |
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| Q |
117 |
cgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaac |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23411054 |
cgtcccatcagaagcaccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccacctccacctcccctcccacaagaaaaac |
23411153 |
T |
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| Q |
217 |
aaccgtttctggtcctcacgcgattggaacaacaaactccattccttctcccgtctcttcctccatattcgcaatctcggtcttcttcctaa |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23411154 |
aaccgtctctggtcctcacgcgattggaacaacaaactccattccttctcccgtctcttcctccatattcgcaatctcggtcttcttcctaa |
23411245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 16538312 - 16538551
Alignment:
| Q |
17 |
agaaggaaatagaaacattcctcagaaaactttccttagtcgccatagccatagcttcactaacactcctcattctcttcctccaaacccctaacacctg |
116 |
Q |
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|||| ||||| || |||||||| |||||||||||| ||| | | ||||||||||||||| |||||||| | ||| ||||| ||||| | || || |
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| T |
16538312 |
agaaagaaattgacacattccttagaaaactttccatagcctctatagccatagcttcagtaacactcatatctctattccttatcacccccgatacatg |
16538411 |
T |
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| Q |
117 |
cgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaac |
216 |
Q |
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||| ||| | ||||| || | ||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||||| |
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| T |
16538412 |
cgttccacccgaagcgccgttaaaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaagaaaaac |
16538511 |
T |
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| Q |
217 |
aaccgtttctggtcctcacgcgattggaacaacaaactcc |
256 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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| T |
16538512 |
aaccgtctctggtcctcacgcgactggaacaacaaactcc |
16538551 |
T |
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