View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_71 (Length: 335)
Name: NF13254_high_71
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 23827135 - 23826838
Alignment:
| Q |
19 |
aatgcgtgtatacacaacaatttaataaaatgcaagtgattgaatcgaatgtaattacgtatgtcagtgcagtattggtttagacattaacacgttcaaa |
118 |
Q |
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| T |
23827135 |
aatgcgtgtatacacaacaatttaataaaatgcaagtgattgaatcgaatgtaattacgtatgtcagtgtagtattggtttagacattaacacgttcaaa |
23827036 |
T |
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| Q |
119 |
cacttgacatgccattattgcgaaaagtgtcgctatatatagcaagatagagtgtcataagaaaagtataacagtactaaaaaagttgagcaacttgact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
23827035 |
cacttgacatgccattattgcgaaaagtgtcgctatatatagcaagatagagtgtcataagaaaagtataacagtacgaaaaaagttgagcaactagact |
23826936 |
T |
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| Q |
219 |
aaaagcttaagctataaaagtttggatggattagtaaagacatatgagaaagatgctgagaacgaaggaaagtgagtatggtgattcatgcatgtaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23826935 |
aaaagcttaagctataaaagtttggatggattagtaaagacatatgagaaagatgctgagaacgaaggaaagtgagtatggtgattcatgcatgtaac |
23826838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 23817871 - 23817813
Alignment:
| Q |
198 |
aaaaagttgagcaacttgactaaaagcttaagctataaaagtttggatggattagtaaa |
256 |
Q |
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|||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
23817871 |
aaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaa |
23817813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 23830952 - 23830920
Alignment:
| Q |
280 |
acgaaggaaagtgagtatggtgattcatgcatg |
312 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
23830952 |
acgaaggaaggtgagtatggtgattcatgcatg |
23830920 |
T |
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