View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_78 (Length: 313)
Name: NF13254_high_78
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 43441203 - 43441018
Alignment:
| Q |
70 |
catatatcatccatgtctttatgcttctctatttaatgagctagattttcattgtnnnnnnnctactacgatatgaacatgtcggaaattcatacttgca |
169 |
Q |
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| T |
43441203 |
catatatcatccatgtctttatgcttctctatttaatgagctagattttcattgtaaaaaaactactacgatatgaacatgtcggaaattcatacttgca |
43441104 |
T |
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| Q |
170 |
accattattggcctaattaagcgcactaaaaatttactaagcaaagatttaataaaattctaggtggaataattattgatccgatt |
255 |
Q |
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| T |
43441103 |
accattattggcctaattaagcgcactaaaaatttaccaagcaaagatttaataaaattctaggtggaataattattgatctgatt |
43441018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 43440618 - 43440545
Alignment:
| Q |
240 |
aattattgatccgattgcattcatctcacaatcaaactttgaattcttgactagattatacttatcttgaggtt |
313 |
Q |
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| T |
43440618 |
aattattgatctgattgcattcatctcacaatcaaactttgaattcttgactagattatacttatcttgaggtt |
43440545 |
T |
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