View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_82 (Length: 298)
Name: NF13254_high_82
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_82 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 30147572 - 30147842
Alignment:
| Q |
18 |
caaactactactaccaccctaaccttcaccatcatcatcacccctaaaaacctccctatactaaaccctctcttatcaactcacccaaacaccatccaaa |
117 |
Q |
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| T |
30147572 |
caaactactattaccaccttaaccttcaccatcatcatcacccctaaaaatctccctatactaaaccctctcttatcaactcacccaaacaccatccaaa |
30147671 |
T |
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| Q |
118 |
cactcattctccctttcccttcacacccaaaaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccct |
217 |
Q |
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| T |
30147672 |
cactcattctccctttcccttcacacccaaaaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccct |
30147771 |
T |
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| Q |
218 |
ctccaatctccaaactccaattatccactggtttaacacccaccctaatccccctgttgcactcatctctg |
288 |
Q |
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| T |
30147772 |
ttccaatctccaaagtccaattatccactggtttaacacccaccctaatccccctgttgcactcatctctg |
30147842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 283
Target Start/End: Complemental strand, 142006 - 141771
Alignment:
| Q |
48 |
atcatcatcacccctaaaaacctccctatactaaaccctctcttatcaactcacccaaacaccatccaaacactcattctccctttcccttcacacccaa |
147 |
Q |
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| T |
142006 |
atcatcgtcactcctaaaaacctccccatcttaacccctcttttgtcaacacacccaaacacaatcaaaacactaatcttcccattcccttcacacccca |
141907 |
T |
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| Q |
148 |
aaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccctctccaatctccaaactccaattatccactg |
247 |
Q |
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| T |
141906 |
aaataccctcagatgttgaaaatctccgtgaaatcggaaaccccggaaactatcctttcattaacgcactttccaatcttcaaaacccaataatccagtg |
141807 |
T |
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| Q |
248 |
gtttaacacccaccctaatccccctgttgcactcat |
283 |
Q |
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| T |
141806 |
gtttaacatccaccataatccccctgttgctctcat |
141771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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