View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_84 (Length: 289)
Name: NF13254_high_84
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_84 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 32704358 - 32704629
Alignment:
| Q |
18 |
tgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctggatttagagttacnnnnnnnggtttacc |
117 |
Q |
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| T |
32704358 |
tgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctggatttagagttacaaaaaaaggtttacc |
32704457 |
T |
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| Q |
118 |
cgcttcttcaatattctgcaaatcaaattagaatcaatagtaatcactcacagtcataaatgaatcacgatgaatgtatttttatagcaatgttaccaac |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704458 |
cgcttcttcaatattctgcaaataaaattagaatcaatagtaatcactcacagtcacaaatgaatcacgatgaatgtatttttatagcaatgttaccaac |
32704557 |
T |
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| Q |
218 |
ctgaagaatgtttagccagtatgtgacacaaactttgttgttgttacttccaagaaaattccaagcactcca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704558 |
ctgaagaatgtttagccagtatgtgacacaaactttgttgttgttacttccaagaaaattccaagcactcca |
32704629 |
T |
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