View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_high_98 (Length: 255)
Name: NF13254_high_98
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_98 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 39944684 - 39944906
Alignment:
| Q |
14 |
tcatcaccaggcctcaatcctctacaaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaagcatagctaatgaacaacatgaacaca |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944684 |
tcatcaccaggcctcaatcctctaccaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaagcatagctaatgaacaacatgaacaca |
39944783 |
T |
|
| Q |
114 |
atagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944784 |
atagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaac |
39944883 |
T |
|
| Q |
214 |
tgtgattgcaactatgacttttc |
236 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39944884 |
tgtgattgcaactatgacttttc |
39944906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 39949175 - 39949251
Alignment:
| Q |
160 |
ccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaactgtgattgcaactatgacttttc |
236 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||| || ||||| ||||| |||| |
|
|
| T |
39949175 |
ccaaggtaattggattgataaaaagacaaaagaacaatccatggtagcagcaactgtaatcgcaacaatgacatttc |
39949251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University