View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_10 (Length: 659)
Name: NF13254_low_10
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 340 - 641
Target Start/End: Complemental strand, 44153157 - 44152833
Alignment:
| Q |
340 |
aattaacaggatcttactactatactaattataccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153157 |
aattaacaggatcttactactatactaattgtaccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
44153058 |
T |
|
| Q |
440 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgcctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153057 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgtctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
44152958 |
T |
|
| Q |
540 |
tttccaattaattaaat-----taaacatattt------ttatgatgattc------------taaaatactaatcttatagagaaaacaacggtaagta |
616 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44152957 |
tttccaattaattaaattaaattaaacatatttttattattatgatgattctaacaaaccaaataaaatactaatcttatagagaaaacaacggtaagta |
44152858 |
T |
|
| Q |
617 |
ttaaatactcctacacggaggtatt |
641 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
44152857 |
ttaaatactcctacatagaggtatt |
44152833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 44153416 - 44153187
Alignment:
| Q |
18 |
taatcggaataatagagtcttaattggacaag-gtgcatcgcattgcacacaccacgtgacaagggaactttatcactatggagtattttgcaactagat |
116 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44153416 |
taataggaataatagagtcctaattggacaaaagtgcatcgcattgcacacaccacgtgacaagggaactttaacacta-----tattttgcaacta--- |
44153325 |
T |
|
| Q |
117 |
tggatttggatgaatataataatataatgagcagtactatctatcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153324 |
--gatttggatgaatataataatataatgagcagtactatctatcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaa |
44153227 |
T |
|
| Q |
217 |
cacatacaagacaaacaaaacttcgataagcacccacaca |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153226 |
cacatacaagacaaacaaaacttcgataagcacccacaca |
44153187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 25013195 - 25013282
Alignment:
| Q |
26 |
ataatagagtcttaattggacaaggtgcatcgcattgcacacaccacgtgacaagggaactttatcactatggagtattttgcaactagattg |
118 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25013195 |
ataatagagtcctaattggacaaagtgcataacattgcacagaccacgtgataagagaactttatcacta-----tattttgcaactagattg |
25013282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 25013287 - 25013347
Alignment:
| Q |
137 |
aatataatgagcagtactatctatcatactgcgctcccacatgcctaacggggaatgcaagacaa |
201 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
25013287 |
aatataatgagcagtactatc----acactgcgctcccacatgcccaacgaggcatgcaagacaa |
25013347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 55014070 - 55014030
Alignment:
| Q |
396 |
ccagcatgcttgttgtcccaaccaaactcattaatggtgtc |
436 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
55014070 |
ccagcatgcttgttgtcccaaccgaactcattgatgttgtc |
55014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University