View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_100 (Length: 254)

Name: NF13254_low_100
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_100
NF13254_low_100
[»] chr3 (13 HSPs)
chr3 (1-236)||(5249044-5249279)
chr3 (15-233)||(4389862-4390080)
chr3 (43-236)||(5266973-5267166)
chr3 (51-233)||(5262709-5262891)
chr3 (51-236)||(5279585-5279770)
chr3 (51-154)||(8470483-8470586)
chr3 (113-190)||(5297718-5297795)
chr3 (51-163)||(6839905-6840017)
chr3 (59-136)||(6916041-6916118)
chr3 (51-165)||(6795619-6795733)
chr3 (56-185)||(6244230-6244359)
chr3 (53-85)||(6946205-6946237)
chr3 (51-163)||(7586788-7586900)
[»] chr7 (1 HSPs)
chr7 (72-136)||(6574347-6574411)
[»] chr4 (1 HSPs)
chr4 (43-82)||(25243555-25243594)
[»] scaffold1643 (1 HSPs)
scaffold1643 (56-154)||(1089-1187)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5249044 - 5249279
Alignment:
Q  1 tttcaattatcaagttattgatttctctagtggcattgtcactgtatatgatatgtaattcttccaaatgcttcttatcttttaattttgcttctagagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5249044 tttcaattatcaagttattgatttctctagtggcattgtcactgtatatgatatgtaattcttccaaatgcttcttatcttttaattttgcttctagagc 5249143  T
Q  101 atctgcaggaataatgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttctgtcaattccttaatatcatacccatgctccttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  5249144 atctgcaggaataatgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttccgtcaactccttaatatcatacccatgctccttt 5249243  T
Q  201 accacagcaaatttagtcaacgtctgaagatgggtt 236  Q
    |||||| |||||||||||||||||||||||||||||    
T  5249244 accacaacaaatttagtcaacgtctgaagatgggtt 5249279  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 4390080 - 4389862
Alignment:
Q  15 ttattgatttctctagtggcattgtcactgtatatgatatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataa 114  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4390080 ttattgatttctctagtggtataagcactgtatatgatatgtaattcttccaaatgcttcttatcttttaattttgcttctagcgcatctgcaggaataa 4389981  T
Q  115 tgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttctgtcaattccttaatatcatacccatgctcctttaccacagcaaattt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| |||||||    
T  4389980 tgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttccgtcaactccttaatatcagacccatggtcctttaccacaacaaattt 4389881  T
Q  215 agtcaacgtctgaagatgg 233  Q
    |||||  ||||||||||||    
T  4389880 agtcagagtctgaagatgg 4389862  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 5266973 - 5267166
Alignment:
Q  43 tgtatatgatatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||| ||||| ||||||||||||| |||||||||||||||||    
T  5266973 tgtatatgatatgtaattcttccaaatgcttcttatcttttaatgttgcttctacaacgtctacaggattaatgacattttccaaccctgaaatacaaag 5267072  T
Q  143 tttcccttgaagctggttgagttctgtcaattccttaatatcatacccatgctcctttaccacagcaaatttagtcaacgtctgaagatgggtt 236  Q
    |||||||||||||||||| ||||| | ||| ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  5267073 tttcccttgaagctggttaagttccgccaactccttaataccagacccatgctcctttaccacaacaaatttagtcagcgtctgaagatgggtt 5267166  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 5262709 - 5262891
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    ||||| ||| |||||| |||  |||||||| | || |||||||| | |||||||||| ||  | |||||||||| |||  ||||||||||||| |  ||     
T  5262709 atatgcaatgcttccagatgtgtcttatctctcaaatttgcttccacagcatctgcacgatcagtgacattttccaactgtgaaatacaaagtgtttctc 5262808  T
Q  151 gaagctggttgagttctgtcaattccttaatatcatacccatgctcctttaccacagcaaatttagtcaacgtctgaagatgg 233  Q
    |||| |||||||||| |  ||||||||||||||||||||||   | || | ||||| |||| || ||||| ||||||||||||    
T  5262809 gaagatggttgagtttttccaattccttaatatcatacccactatgctctcccacaacaaaatttgtcaaagtctgaagatgg 5262891  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 5279585 - 5279770
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    ||||| ||| ||||||||||  |||||| ||| || |||||||| | |||||||||| ||  | |||||||||| |||  ||||||||||||| | |||     
T  5279585 atatgcaatacttccaaatgtctcttatttttcaaatttgcttccacagcatctgcacgatcagtgacattttccaactgtgaaatacaaagtgttcctc 5279684  T
Q  151 gaagctggttgagttctgtcaattccttaatatcatacccatgctcctttaccacagcaaatttagtcaacgtctgaagatgggtt 236  Q
    |||| |||||||||| |  ||| |||||||||| | |||||   | || | ||||| |||| || |||||||||| ||||||||||    
T  5279685 gaagatggttgagtttttccaactccttaatattagacccactatgctctcccacaacaaaatttgtcaacgtctcaagatgggtt 5279770  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 8470483 - 8470586
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    |||| ||||||||| | ||| ||||||||||| || |||||| ||   |||||| | ||| ||||||||| ||| ||||||||||||||||||||||||     
T  8470483 atatttaattcttctacatgtttcttatctttcaaatttgctcctgctgcatcttcgggattaatgacatgttccaaccctgaaatacaaagtttccctc 8470582  T
Q  151 gaag 154  Q
    ||||    
T  8470583 gaag 8470586  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 5297718 - 5297795
Alignment:
Q  113 aatgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttctgtcaattccttaatatcataccc 190  Q
    |||||||||||| ||||||||||||| |||| | |||||||| |||||||||| || ||| || ||||||||| ||||    
T  5297718 aatgacattttccaaccctgaaatacgaagtgtaccttgaagatggttgagttttgccaactcattaatatcagaccc 5297795  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 6840017 - 6839905
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    |||| ||||||||| | ||| | ||||||||| ||||||||| ||   |||||| |  || ||||||||| ||| || ||||||||||||||||||||||    
T  6840017 atatttaattcttctacatgttccttatctttcaattttgctgctgccgcatcttcgagactaatgacatgttccaatcctgaaatacaaagtttccctt 6839918  T
Q  151 gaagctggttgag 163  Q
    |||| || |||||    
T  6839917 gaagatgattgag 6839905  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 6916041 - 6916118
Alignment:
Q  59 ttcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaat 136  Q
    |||||| ||||| ||||||||||| || |||||| | | |||||||||||||  |||||||||||  |||||||||||    
T  6916041 ttcttctaaatgtttcttatctttcaaatttgctgccacagcatctgcaggatcaatgacatttttcaaccctgaaat 6916118  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 6795733 - 6795619
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    |||| ||||||||| | ||| ||||||||||| || |||||| ||   |||||| ||||| ||||||||| ||| || | | |||||| |||||| ||||    
T  6795733 atatttaattcttctacatgtttcttatctttcaaatttgctcctgccgcatcttcaggattaatgacatgttccaatcataaaatactaagttttcctt 6795634  T
Q  151 gaagctggttgagtt 165  Q
    |||| || |||||||    
T  6795633 gaagatgattgagtt 6795619  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 6244230 - 6244359
Alignment:
Q  56 taattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttcccttgaagc 155  Q
    ||||||||| ||||| ||||||||||| || |||||| | | ||||||||| |||  |   |||||||  ||||||||||| | |||| | |||  |||     
T  6244230 taattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcagccacatttttcaaccctgaaattcgaagtcttcctctaagg 6244329  T
Q  156 tggttgagttctgtcaattccttaatatca 185  Q
    ||||||||||||| ||| | ||||||||||    
T  6244330 tggttgagttctgccaactgcttaatatca 6244359  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 6946205 - 6946237
Alignment:
Q  53 atgtaattcttccaaatgcttcttatcttttaa 85  Q
    |||||||||||| ||||||||||||||||||||    
T  6946205 atgtaattcttctaaatgcttcttatcttttaa 6946237  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 7586788 - 7586900
Alignment:
Q  51 atatgtaattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttccctt 150  Q
    |||| ||||||||| | ||| ||||||||||| || |||||| ||  ||||||  | |||   ||||||| ||| | ||||||||||||||||| |||||    
T  7586788 atatttaattcttctacatgtttcttatctttcaaatttgctcctgcagcatccacgggatcgatgacatgttccatccctgaaatacaaagttcccctt 7586887  T
Q  151 gaagctggttgag 163  Q
    |||| || |||||    
T  7586888 gaagatgattgag 7586900  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 6574411 - 6574347
Alignment:
Q  72 ttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaat 136  Q
    ||||||||||| || |||||||||  ||||||||| ||| ||||||||| ||| |||||||||||    
T  6574411 ttcttatctttcaaatttgcttctgcagcatctgcgggattaatgacatgttccaaccctgaaat 6574347  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 25243594 - 25243555
Alignment:
Q  43 tgtatatgatatgtaattcttccaaatgcttcttatcttt 82  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  25243594 tgtatatcatgtgtaattcttccaaatgcttcttatcttt 25243555  T

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Target: scaffold1643 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 1089 - 1187
Alignment:
Q  56 taattcttccaaatgcttcttatcttttaattttgcttctagagcatctgcaggaataatgacattttctaaccctgaaatacaaagtttcccttgaag 154  Q
    ||||||||| | ||| ||||||||||| || ||||||  |   |||||| | ||| | ||||||| ||| || ||||||||||||||||||||||||||    
T  1089 taattcttctacatgtttcttatctttcaaatttgctcttgccgcatcttcgggattgatgacatgttccaatcctgaaatacaaagtttcccttgaag 1187  T

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