View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_107 (Length: 250)
Name: NF13254_low_107
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_107 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 32506014 - 32505771
Alignment:
| Q |
1 |
ctctactgtgagggtgcatgcaagttatattgctccccatcaatcaattaccacatgatgaaaattagagggtgatgtgccgattacagcacaaatccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32506014 |
ctctactgtgagggtgcatgcaagttatattgctccc-atcaattaattaccacatgatgaaaattagagggtgatgtgccgatcacagcgcaaatccct |
32505916 |
T |
|
| Q |
101 |
cgaggacaacggacattttgcactaggagaaaagtacacatttcatttcgttacattcatcttaataaaaaattgacttgaacgtcgaaatacttgtaga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32505915 |
cgaggacaacagacattttgcactaggagaaaagtacacatttcatttcgttacattcatcttaataaaaaattgacttgaaagtcgaaatacttgtaga |
32505816 |
T |
|
| Q |
201 |
tacaatattccattaagatgtaacagcgatgttctcctctgtgct |
245 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
32505815 |
tacaacattccattaagatgtaacagtgatgctctcctccgtgct |
32505771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University