View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_108 (Length: 250)
Name: NF13254_low_108
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_108 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 34785701 - 34785943
Alignment:
| Q |
8 |
ccaagaaaataccatcattcagacttgtgctgttgcttgctatagcattgctgttagtggtaagattcaaagcctactacatatttatcattttcaacag |
107 |
Q |
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| T |
34785701 |
ccaagaaaataccatcattcagacttgtgctgttgcttgctatagcattgctgttagtggtaagattcaaagcctactacatatttatcattttcaacag |
34785800 |
T |
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| Q |
108 |
atacatcttactttccgtcacctaagaaatcaaagacacatacggtagtacgattttataaatcagatcatgtttaagtaaggtcgtttcatacatacat |
207 |
Q |
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| T |
34785801 |
atacatcttactttccgtcgcctaagaaatcaaagatacatacggtagtacgattttataaatcagatcatgtttaagtaaggtcgtttcatacatacat |
34785900 |
T |
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| Q |
208 |
acatacaaacaaatatattatttcttcatacttactagctact |
250 |
Q |
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| T |
34785901 |
acatacaaacaaatatattatttcttcatacttactagctact |
34785943 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 42038776 - 42038829
Alignment:
| Q |
9 |
caagaaaataccatcattcagacttgtgctgttgcttgctatagcattgctgtt |
62 |
Q |
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||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
42038776 |
caagagaatactatcattcaaacttgtgcagttgcttgctatagcatcgctgtt |
42038829 |
T |
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