View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_110 (Length: 245)
Name: NF13254_low_110
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_110 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 6249265 - 6249053
Alignment:
| Q |
18 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249265 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
6249166 |
T |
|
| Q |
118 |
aagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249165 |
aagccttcaaaattaaagggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
6249066 |
T |
|
| Q |
218 |
ctatctctctgtg |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6249065 |
ctatctctctgtg |
6249053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 43047421 - 43047209
Alignment:
| Q |
18 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43047421 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaactgatggaattctctgttttacatagacaacaatggaagct |
43047322 |
T |
|
| Q |
118 |
aagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43047321 |
aagccttcaaaattaaaaggagaatatggatgaaatgaaatgaaggagatggatcacatgatttgtattcttcattttttctaaagagtgataccatagt |
43047222 |
T |
|
| Q |
218 |
ctatctctctgtg |
230 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
43047221 |
ctgtctctctgtg |
43047209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University