View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_112 (Length: 242)
Name: NF13254_low_112
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 44632359 - 44632208
Alignment:
| Q |
76 |
caatgttgtagggacatctcacggtcttnnnnnnnntacctgcgttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcag |
175 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632359 |
caatgttgtagggacatctcacggtcttaaaaaaaatacctgcgttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcag |
44632260 |
T |
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| Q |
176 |
tgtttgaacaatttcatatccataagctgacatagcctgttgaggttattca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632259 |
tgtttgaacaatttcatatccataagctgacatagcctgttgaggttattca |
44632208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 44653796 - 44653689
Alignment:
| Q |
112 |
tacctgcgttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44653796 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44653697 |
T |
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| Q |
212 |
ctgttgag |
219 |
Q |
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|||||||| |
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| T |
44653696 |
ctgttgag |
44653689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 44682804 - 44682697
Alignment:
| Q |
112 |
tacctgcgttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44682804 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44682705 |
T |
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| Q |
212 |
ctgttgag |
219 |
Q |
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|||||||| |
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| T |
44682704 |
ctgttgag |
44682697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 44692487 - 44692390
Alignment:
| Q |
120 |
ttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttg |
217 |
Q |
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|||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44692487 |
ttgatttcattcatggccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagcctgttg |
44692390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 44636572 - 44636668
Alignment:
| Q |
120 |
ttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgtt |
216 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44636572 |
ttgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcctgtt |
44636668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 25103560 - 25103633
Alignment:
| Q |
140 |
cttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcct |
213 |
Q |
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|||||||||||||||||| || ||||| ||| || || ||||| || |||||||||||||||||||| |||| |
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| T |
25103560 |
cttcacatgctcatctggttcaatatccacaatgagagtctgaactatctcatatccataagctgacatggcct |
25103633 |
T |
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