View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_114 (Length: 237)
Name: NF13254_low_114
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_114 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 44547311 - 44547503
Alignment:
| Q |
10 |
ataatactgtaacagatttcggtgaagctacaatgcaagtggaggttggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga |
109 |
Q |
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| T |
44547311 |
ataatactataacagatttcggtgaagctacaatgcaagtggagattggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga |
44547410 |
T |
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| Q |
110 |
gctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactcaagagctagaaagggtggt |
202 |
Q |
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| T |
44547411 |
gctaggaagggtggtggctggtcctcaggctcaacctcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggt |
44547503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 44547645 - 44547759
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactcaagagctagaaagggtggtt |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
44547645 |
tcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggtt |
44547744 |
T |
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| Q |
204 |
gttgcaccacagact |
218 |
Q |
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||||| ||||||||| |
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| T |
44547745 |
gttgctccacagact |
44547759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 44547447 - 44547594
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtg |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||| |||||| |
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| T |
44547447 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggta |
44547546 |
T |
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| Q |
168 |
gctggtcctcaaactcaagagctagaaagggtggttgttgcaccacag |
215 |
Q |
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||||||||||| |||||||||||| |||| |||||| ||| |||||| |
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| T |
44547547 |
gctggtcctcatgctcaagagctaggaaggatggttgctgctccacag |
44547594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 44547849 - 44547962
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactcaagagctagaaagggtggtt |
203 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||| ||||| |||||||||| |
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| T |
44547849 |
tcaagagctaggaagggtggtggctggtcctcaagctcagcctcaagagctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggtt |
44547948 |
T |
|
| Q |
204 |
gttgcaccacagac |
217 |
Q |
| |
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| ||| |||||||| |
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| T |
44547949 |
gctgctccacagac |
44547962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 44548089 - 44548184
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactcaagagctagaaagggt |
199 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||| |||||| |||||| |
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| T |
44548089 |
tcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagagttaggaatggtggtgactggttctcagactcaaaagctaggaagggt |
44548184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 44547525 - 44547628
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtg |
167 |
Q |
| |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||| || | ||| || | |||||||||| | ||||||| |||| || |
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| T |
44547525 |
tcaagagctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaagggtgatg |
44547624 |
T |
|
| Q |
168 |
gctg |
171 |
Q |
| |
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|||| |
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| T |
44547625 |
gctg |
44547628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 44547891 - 44548025
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtg |
167 |
Q |
| |
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||||||||||| || |||||| |||||| |||| |||| ||||| |||||||||| || | ||| || | ||||||||| | ||||||| ||||||| |
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| T |
44547891 |
tcaagagctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggttgctgctccacagacccaacctcaaaagctaggaagggtggtg |
44547990 |
T |
|
| Q |
168 |
gctggtcctcaaactcaagagctagaaagggtggt |
202 |
Q |
| |
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||||||||||| |||||||| ||| ||||||||| |
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| T |
44547991 |
gctggtcctcaggctcaagagataggaagggtggt |
44548025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 44547969 - 44548067
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggt |
166 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||| | ||||||| |||||||||||||||| ||| || |||||||||||||| || |||| |||||| |
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| T |
44547969 |
tcaaaagctaggaagggtggtggctggtcctcaggctcaagagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaagggtggt |
44548067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 44547687 - 44547839
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtg |
167 |
Q |
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||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| | | ||| || ||||||||||| | ||||||| |||||| |
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| T |
44547687 |
tcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggttgttgctccacagactcaacctcaaaagctaggaagggtggtt |
44547786 |
T |
|
| Q |
168 |
gctggtcctcaa------actcaagagctagaaagggtggttgttgcaccaca |
214 |
Q |
| |
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||| |||||||| |||||||||||||||| ||||| ||||| ||||| |
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| T |
44547787 |
gctagtcctcaagctcaggctcaagagctagaaagagtggtggttgctccaca |
44547839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 44547807 - 44547887
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactca |
184 |
Q |
| |
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||||||||||| ||| ||||||| | ||| || |||||||||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
44547807 |
tcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaagggtggtggctggtcctcaagctca |
44547887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 44548047 - 44548127
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactca |
184 |
Q |
| |
|
||||||||| ||||||||||| || ||| || |||||||||||| | ||||||| ||||||||||||||||||| |||| |
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| T |
44548047 |
tcaagagctgggaagggtggttgctactccacaggctcaacctcaaaagctaggaagggtggtggctggtcctcaagctca |
44548127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 44548167 - 44548250
Alignment:
| Q |
68 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaaga |
151 |
Q |
| |
|
|||| |||||| |||||| || ||||||||||| | |||||||||||||||| ||||||| | ||| ||| |||| |||||||| |
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| T |
44548167 |
tcaaaagctaggaagggtagtggctggtcctcaggctcaagagctaggaaggatggtggctgctccacaaactcagcctcaaga |
44548250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 44547603 - 44547684
Alignment:
| Q |
104 |
tcaagagctaggaagggtggtggcgggtcctcaagctcaacctcaagatctaggaatggtggtggctggtcctcaaactcaa |
185 |
Q |
| |
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|||| |||||||||||||| |||| | ||| || ||||| |||||| | ||||||| ||||||||| ||||||||| ||||| |
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| T |
44547603 |
tcaaaagctaggaagggtgatggctgctccacatgctcagcctcaaaagctaggaagggtggtggcgggtcctcaagctcaa |
44547684 |
T |
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