View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_116 (Length: 234)
Name: NF13254_low_116
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26656400 - 26656180
Alignment:
| Q |
1 |
tcataatcaattactatatgcttagataaattagctgtattattgtgatcatttatgcagtttccttaactatttgctatagcatggcatgcctccttga |
100 |
Q |
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| T |
26656400 |
tcataagcaattactatatgcttagataaattagctgtattattgtgatcatttatgcagtttccttaactatttgctatagcatggcatgcctctttga |
26656301 |
T |
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| Q |
101 |
gaacaggttctttgttgagagaatcacattctttatatgaatatcaagttattcttaaattcattataatccctttgtactaggaaatgatattttgaca |
200 |
Q |
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| T |
26656300 |
gaacaggttctttgttgagagaatcacattcttaatatgaatatcaagttattcttaaattcattataatccctttgtaataggaaatgatattttgaca |
26656201 |
T |
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| Q |
201 |
agtaaatttgaatcaaaattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
26656200 |
agtaaatttgaatcaaaattt |
26656180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 26661315 - 26661129
Alignment:
| Q |
52 |
tttatgcagtttccttaactatttgctatagcatgg-catgcctccttgagaacaggttctttgttgagagaatcacattctttatat------------ |
138 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||||| |||||| |
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| T |
26661315 |
tttatgcagtttcctgaactatttgctatagcatgggcatgcctcctcgagaacagattctttgttgatagaatcacattccttatatcataggaaaaag |
26661216 |
T |
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| Q |
139 |
---gaatatcaagttattctta-----aattcattataatccctttgtactaggaaatgatattttgacaagtaaatttgaatcaaa |
217 |
Q |
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| T |
26661215 |
aaagaatatcaagttattcttaacttcaattcattataatccctttgcaatagaaaatgatattttgacaagtaaatttgaatcaaa |
26661129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 26640190 - 26640136
Alignment:
| Q |
75 |
tgctatagcatggcatgcctccttgagaacaggttctttgttgagagaatcacat |
129 |
Q |
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| T |
26640190 |
tgctatagcatggcatgcctcctcgagaacgtattctttgttgaaagaatcacat |
26640136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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