View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_119 (Length: 228)
Name: NF13254_low_119
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_119 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 2435981 - 2436184
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435981 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
2436080 |
T |
|
| Q |
118 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccatttacacatccctagttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2436081 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctcatgcaaaatgacagttccatttacacatccctagttca |
2436180 |
T |
|
| Q |
218 |
tctc |
221 |
Q |
| |
|
|||| |
|
|
| T |
2436181 |
tctc |
2436184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 2675131 - 2674928
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2675131 |
gattctgaatccgaacgagttgttcaagaagctctagacaaagcggcggttggacgcaccaccatcatcatcgctcaccgcttatcaaccatccaaaatg |
2675032 |
T |
|
| Q |
118 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccatttacacatccctagttca |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||||| ||||| |||| |
|
|
| T |
2675031 |
cagacatcattgcagttgtccaaaatggtaagatcatggaaacgggatctcacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcg |
2674932 |
T |
|
| Q |
218 |
tctc |
221 |
Q |
| |
|
|||| |
|
|
| T |
2674931 |
tctc |
2674928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 2589811 - 2589995
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2589811 |
gattctgaatcagaaagggttgtccaagaagctctagacaaagctaccgttggacgcaccaccatcatcatcgctcaccgcctatctaccatccaaaatg |
2589910 |
T |
|
| Q |
118 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccattta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||| ||| ||||| |
|
|
| T |
2589911 |
cagacatcattgcagttgttcaaaatggtaagattatggaaataggatctcacgaaagcctcgtgcaagatgacaattcaattta |
2589995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 2571640 - 2571437
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2571640 |
gattctgaatccgaacgagtcgtccaagaagctctagacaaagctgcagttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatg |
2571541 |
T |
|
| Q |
118 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccatttacacatccctagttca |
217 |
Q |
| |
|
||||||| ||||| || |||||||||||| | ||||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
2571540 |
cagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatctcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcg |
2571441 |
T |
|
| Q |
218 |
tctc |
221 |
Q |
| |
|
|||| |
|
|
| T |
2571440 |
tctc |
2571437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 2621377 - 2621581
Alignment:
| Q |
17 |
agattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaat |
116 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2621377 |
agattctgaatccgaaagagttgtccaagaagctttagacaaagccaccgttggacgcaccaccatcatcatcgctcaccgcttatccaccattcaaaat |
2621476 |
T |
|
| Q |
117 |
gcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccatttacacatccctagttc |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||| ||| ||||| | ||||| |||| |
|
|
| T |
2621477 |
gcagacatcattgcggttgttcaaaatggtatgatcgcggaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttc |
2621576 |
T |
|
| Q |
217 |
atctc |
221 |
Q |
| |
|
|||| |
|
|
| T |
2621577 |
gtctc |
2621581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 2449159 - 2449358
Alignment:
| Q |
17 |
agattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaat |
116 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| | || ||||| ||||| |||||||||||| ||||||||||||||||||||||||||| || | |
|
|
| T |
2449159 |
agattttgaatccgaacgagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcgctcaccgcttatccaccatcagaact |
2449258 |
T |
|
| Q |
117 |
gcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagttccatttacacatccctagttc |
216 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||| |||| |
|
|
| T |
2449259 |
gcagatatcattgcaatcgttcaaaatggtaagatcgtggaaacaggatctcacgaaagccttatgcaaaatgacagctctctttacacctccctcgttc |
2449358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 2643282 - 2643122
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2643282 |
gattctgaatccgaacgaattgtccaagacgctctagacaaagtcgcagttggacgcacaaccatcatcatcgctcatcgcctatccaccatccaaaatg |
2643183 |
T |
|
| Q |
118 |
cagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcct |
178 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| |||||||||||| |||| |||||||| |
|
|
| T |
2643182 |
ctgacatcattgcagtgtttcaaaatggcaagataatggaaacaggaactcatgaaagcct |
2643122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 2598393 - 2598288
Alignment:
| Q |
18 |
gattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatg |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2598393 |
gattctgaatccgaacgagtcgtccaagaagctctagacaaagcttcagttggacgcaccaccatcatcatcgctcaccgattatctaccatccaaaatg |
2598294 |
T |
|
| Q |
118 |
cagaca |
123 |
Q |
| |
|
|||||| |
|
|
| T |
2598293 |
cagaca |
2598288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University