View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_128 (Length: 201)
Name: NF13254_low_128
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_128 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 3022851 - 3022673
Alignment:
| Q |
11 |
agtagcaaaggaaacatgtaaactatattttgcgtactttgttctagcccagagtgttgttta----cttattatctcgaaataattttagctaaaactt |
106 |
Q |
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| T |
3022851 |
agtatcaaaggaaacgtgtaaactatattttgcgtactttgttctagcccagagtgttgtttaattacttattatctcgaaataattttagctaaaactt |
3022752 |
T |
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| Q |
107 |
actcaaattgctcttgattcttttggaccttgaatcacccatttcaagtgatgatatggaccatctttcctcaaaataa |
185 |
Q |
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| T |
3022751 |
actcaaattgctcttgattcttttggaccttgaatcacccatttcaagtgatgatatggaccatctttcctcaaaataa |
3022673 |
T |
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