View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_13 (Length: 598)
Name: NF13254_low_13
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 322 - 588
Target Start/End: Original strand, 28053996 - 28054262
Alignment:
| Q |
322 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgtct |
421 |
Q |
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| T |
28053996 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgact |
28054095 |
T |
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| Q |
422 |
ttggtaggagtgtttgaacttttcggcaggtcgttttcaatgcaaaaagtcgtatccgtagatttgactggagattttttgttctcgtgatctaatgtac |
521 |
Q |
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| T |
28054096 |
ttggtaggagtgtttgaacttttcggcacgtcgttttcagtgcaaaaagtcgtatccgtagatttgactggagattttttcttctcgtgatctaatgtac |
28054195 |
T |
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| Q |
522 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
588 |
Q |
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| T |
28054196 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
28054262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 28053700 - 28053921
Alignment:
| Q |
20 |
gtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcgtaactgcttccactcgacaatctag |
119 |
Q |
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| T |
28053700 |
gtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcgtaactgcttccactcgacaatctag |
28053799 |
T |
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| Q |
120 |
ataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatccggcgaagacaccttcgccgaatccggaagcagaagctcacgatcctc |
219 |
Q |
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| T |
28053800 |
ataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatcaggcgaagacaccttctctgaatccggaagcagaagctcacgatcctc |
28053899 |
T |
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| Q |
220 |
ctcgtcgtcttcatgtagaata |
241 |
Q |
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| T |
28053900 |
ctcgtcctcttcatgtagaata |
28053921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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