View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_14 (Length: 584)
Name: NF13254_low_14
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 104 - 569
Target Start/End: Original strand, 44632579 - 44633043
Alignment:
| Q |
104 |
ccatattttcttatacttatttctgtcttgtgatcagctgcaaggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagc |
203 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||||||||| ||||| | ||||| || ||||| || || |||||||| ||||||||||| |||| |
|
|
| T |
44632579 |
ccatattttcttatactggtttctgtctt-tcatcagctgcaagaatgaggttagcagctaaggagaaagcggaggcagagaagatcttgcaaataaagc |
44632677 |
T |
|
| Q |
204 |
gagccgagggtgaggctgagtctaaatatctctctgggctgggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggatt |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
44632678 |
gagccgagggtgaggctgagtccaaatatctctctgggatgggtattgctcgccaacgtcaagccattgtggatggtttgagagacagtgtgattggatt |
44632777 |
T |
|
| Q |
304 |
ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaag |
403 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632778 |
ctcggttaatgtaccagggacaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaag |
44632877 |
T |
|
| Q |
404 |
tcttctgctgtgttcattccacatggacctggcgctgttcgcgatgttgctagccaaattcgcgatggacttctccagggttctcatcagtagcttctat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632878 |
tcttctgctgtgttcattccacatggacctggcgctgttcgcgatgttgctagccaaattcgcgatggacttctccagggttctcatcagtagcttctat |
44632977 |
T |
|
| Q |
504 |
tcctcccacttcatatctgatttgtatggaagtgttgtgattttttaatgttttatgtctctgcag |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632978 |
tcctcccacttcatatctgatttgtatggaagtgttgtgattttttaatgttttatgtctctgcag |
44633043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 104 - 547
Target Start/End: Original strand, 44654444 - 44654893
Alignment:
| Q |
104 |
ccatattttcttatacttatttctgtcttgtgatcagctgcaaggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagc |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44654444 |
ccatattttcttatactgttttctgtcttgtgatcagctgcaagaatgaggttggcagctaaagagaaggctgaagcagagaaaatcttgcaaattaagc |
44654543 |
T |
|
| Q |
204 |
gagccgagggtgaggctgagtctaaatatctctctgggctgggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
44654544 |
gagccgagggtgaggctgagtctaaatatctctctgggttgggtattgctcgccagcgtcaagcgattgtggatggtttgagagacagtgtgattggatt |
44654643 |
T |
|
| Q |
304 |
ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaag |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
44654644 |
ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaag |
44654743 |
T |
|
| Q |
404 |
tcttctgctgtgttcattccacatggacctggcgctgttcgcgatgttgctagccaaattcgcgatggacttctccagggt------tctcatcagtagc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| | |
|
|
| T |
44654744 |
tcttctgctgtgttcattccacatggacctggtgctgttcgtgatgtagctagccaaattcgtgatggacttctccagggttctctatctcatcagtaac |
44654843 |
T |
|
| Q |
498 |
ttctattcctcccacttcatatctgatttgtatggaagtgttgtgatttt |
547 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||| |||| |||||||| |
|
|
| T |
44654844 |
ttctactcctcctgcttcatatctgatttatgtgggggtgtggtgatttt |
44654893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 104 - 488
Target Start/End: Original strand, 44683243 - 44683627
Alignment:
| Q |
104 |
ccatattttcttatacttatttctgtcttgtgatcagctgcaaggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagc |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44683243 |
ccatattttcttatactgttttctgtcttgtgatcagctgcaagaatgaggttggcagctaaagagaaggctgaagcagagaaaatcttgcaaattaagc |
44683342 |
T |
|
| Q |
204 |
gagccgagggtgaggctgagtctaaatatctctctgggctgggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
44683343 |
gagccgagggtgaggctgagtctaaatatctctctgggttgggtattgctcgccagcgtcaagccattgtggatggtttgagagacagtgtgattggatt |
44683442 |
T |
|
| Q |
304 |
ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaag |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44683443 |
ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggggctgcctccaag |
44683542 |
T |
|
| Q |
404 |
tcttctgctgtgttcattccacatggacctggcgctgttcgcgatgttgctagccaaattcgcgatggacttctccagggttctc |
488 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
44683543 |
tcttctgctgtgttcattccacacggacctggcgctgttcgtgatgtagctagtcaaattcgtgatggacttctccagggttctc |
44683627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 134 - 509
Target Start/End: Original strand, 44693005 - 44693380
Alignment:
| Q |
134 |
tgatcagctgcaaggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagcgagccgagggtgaggctgagtctaaatatc |
233 |
Q |
| |
|
|||| ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44693005 |
tgattagctgcaagaatgaggatcgcagctaatgagaaggctgaagcagagaaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatc |
44693104 |
T |
|
| Q |
234 |
tctctgggctgggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggattttcagttaatgtaccagggacgactgcaaa |
333 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||| |
|
|
| T |
44693105 |
tctctgggatgggtattgctcgtcaacgtcaagccattgtagatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaa |
44693204 |
T |
|
| Q |
334 |
agatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaagtcttctgctgtgttcattccacatggacct |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693205 |
agatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacct |
44693304 |
T |
|
| Q |
434 |
ggcgctgttcgcgatgttgctagccaaattcgcgatggacttctccagggttctcatcagtagcttctattcctcc |
509 |
Q |
| |
|
|| |||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44693305 |
ggtgctgttcgtgatgtagctagccaaatttgtgatggacttctccagggttctcatcagtagcttctactcctcc |
44693380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 53 - 569
Target Start/End: Complemental strand, 44636321 - 44635799
Alignment:
| Q |
53 |
tttaccatgtttctctaccgagtgctatatgccaaatatcccctt-gttcgt------ccatattttcttatacttatttctgtcttgtgatcagctgca |
145 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| || |||| | ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
44636321 |
tttaccatgtttctctaccgagtgctttatgcctaatatctattttgttcttggattgccatattttcttatactggtttctgtcttc-gatcagctgca |
44636223 |
T |
|
| Q |
146 |
aggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagcgagccgagggtgaggctgagtctaaatatctctctgggctgg |
245 |
Q |
| |
|
|| |||| |||||||| || || ||||| || |||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
44636222 |
agaatgagagtggcagctaaagaaaaggcagaggcagagaagatcttgcaagtaaagcgagccgagggtgaggctgaatctaaatatctccatggggtgg |
44636123 |
T |
|
| Q |
246 |
gtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggattttcagttaatgtaccagggacgactgcaaaagatgtcatgga |
345 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
44636122 |
gtattgctcgtcaacgtcaagccattgtggatggtttgagagacagtgtgattggattttcagttaatgtaccagggacaagtgctaaagatgtcatgga |
44636023 |
T |
|
| Q |
346 |
tatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaagtcttctgctgtgttcattccacatggacctggcgctgttcgc |
445 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
44636022 |
tttggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaaatcttctgctgtgttcattccacacggacctggtgctgttcgc |
44635923 |
T |
|
| Q |
446 |
gatgttgctagccaaattcgcgatggacttctccagggttctcatcagtagcttctattcctcccacttcatatctgatttgtatggaagtgttgtgatt |
545 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||| |||| |||||| |
|
|
| T |
44635922 |
gatgtagtaagccaaattcgtgacggacttctccagggttctcatgagtagcttctattcctcctactttttatctgatctgtataagagtgcggtgatt |
44635823 |
T |
|
| Q |
546 |
ttttaatgttttatgtctctgcag |
569 |
Q |
| |
|
|||||||| ||| ||||||||||| |
|
|
| T |
44635822 |
ttttaatgctttttgtctctgcag |
44635799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 245 - 509
Target Start/End: Original strand, 44625430 - 44625694
Alignment:
| Q |
245 |
ggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggattttcagttaatgtaccagggacgactgcaaaagatgtcatgg |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625430 |
ggtattgctcgccagcgtcaagcgattgtggatggtttgagagacagtgtgattggattttcagttaatgtaccagggacgactgcaaaagatgtcatgg |
44625529 |
T |
|
| Q |
345 |
atatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaagtcttctgctgtgttcattccacatggacctggcgctgttcg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44625530 |
atatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctggtgctgttcg |
44625629 |
T |
|
| Q |
445 |
cgatgttgctagccaaattcgcgatggacttctccagggttctcatcagtagcttctattcctcc |
509 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44625630 |
tgatgtagctagccaaatttgtgatggacttctccagggttctcatcagtagcttctactcctcc |
44625694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 44683165 - 44683199
Alignment:
| Q |
13 |
gtatgaagtataacttttgtctcaaatgattaatt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44683165 |
gtatgaagtataacttttgtctcaaatgattaatt |
44683199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 138 - 441
Target Start/End: Original strand, 3205008 - 3205311
Alignment:
| Q |
138 |
cagctgcaaggttgagggtggcagcaaatgagaaggctgaagcagagaaaatcttgcaaattaagcgagccgagggtgaggctgagtctaaatatctctc |
237 |
Q |
| |
|
|||||||||| ||||| |||| || || ||||||||||||||||| || || ||||| || ||| ||| || || || |||||||| |||||||| || |
|
|
| T |
3205008 |
cagctgcaagaatgaggttggctgcgaacgagaaggctgaagcagaaaagatattgcagatcaagaaagctgaaggagaagctgagtccaaatatctgtc |
3205107 |
T |
|
| Q |
238 |
tgggctgggtattgctcgccagcgtcaagcgattgtagatggtttgagagatagtgtgattggattttcagttaatgtaccagggacgactgcaaaagat |
337 |
Q |
| |
|
|| || ||||| |||||||| |||||||| ||||| || || ||||||| || ||| ||| ||| |||| ||||| || || || ||||| |||||| |
|
|
| T |
3205108 |
aggactcggtatagctcgccaacgtcaagcaattgttgacggactgagagacagcgtgcttgcattctcagagaatgttcccggaacaactgctaaagat |
3205207 |
T |
|
| Q |
338 |
gtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaagtcttctgctgtgttcattccacatggacctggcg |
437 |
Q |
| |
|
|||||||| ||||| | || ||||||||||| ||||| |||| |||||||| || |||| || || || ||||||||||||||||||| ||||| | |
|
|
| T |
3205208 |
gtcatggacatggtgttggtgactcaatacttcgacaccatgaaggaaattggtgcatcctcaaaatcgtcatctgtgttcattccacatggtcctggtg |
3205307 |
T |
|
| Q |
438 |
ctgt |
441 |
Q |
| |
|
|||| |
|
|
| T |
3205308 |
ctgt |
3205311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 25103060 - 25103000
Alignment:
| Q |
330 |
caaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattgg |
390 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| || ||||| |
|
|
| T |
25103060 |
caaaggatgtcatggacatggttcttgtgacccaatactttgacacattgaaggagattgg |
25103000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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