View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_24 (Length: 515)
Name: NF13254_low_24
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 196 - 497
Target Start/End: Complemental strand, 44153157 - 44152833
Alignment:
| Q |
196 |
aattaacaggatcttactactatactaattataccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
295 |
Q |
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| T |
44153157 |
aattaacaggatcttactactatactaattgtaccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
44153058 |
T |
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| Q |
296 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgcctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153057 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgtctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
44152958 |
T |
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| Q |
396 |
tttccaattaattaaat-----taaacatattt------ttatgatgattc------------taaaatactaatcttatagagaaaacaacggtaagta |
472 |
Q |
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| T |
44152957 |
tttccaattaattaaattaaattaaacatatttttattattatgatgattctaacaaaccaaataaaatactaatcttatagagaaaacaacggtaagta |
44152858 |
T |
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| Q |
473 |
ttaaatactcctacacggaggtatt |
497 |
Q |
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| T |
44152857 |
ttaaatactcctacatagaggtatt |
44152833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 44153284 - 44153187
Alignment:
| Q |
15 |
atcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaacacatacaagacaaacaaaacttcgataagcacccacaca |
112 |
Q |
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| T |
44153284 |
atcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaacacatacaagacaaacaaaacttcgataagcacccacaca |
44153187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 55014070 - 55014030
Alignment:
| Q |
252 |
ccagcatgcttgttgtcccaaccaaactcattaatggtgtc |
292 |
Q |
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| T |
55014070 |
ccagcatgcttgttgtcccaaccgaactcattgatgttgtc |
55014030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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