View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_25 (Length: 510)
Name: NF13254_low_25
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 43135232 - 43134753
Alignment:
| Q |
19 |
aattccaacttcatatccattaattcaaactaataaaactacacaactcttaataaaaattcaatttaatatgtcacattcacatatatactcgtggtcc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43135232 |
aattccaacttcatatccactaattcaaactaataaaactacacaactctcaataaaaattcaatttaatatgtcacattcacatatatactcgtggtcc |
43135133 |
T |
|
| Q |
119 |
aatttatttctatacaacaaaaaagaatacttacgttaatctttgacattttcatacataagataatttacttgctctattatctttacaaagctatgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43135132 |
aatttatttctatacaacaaaaaatattacttacgttaatctttgacattttcatacataagataatttactt--tctattatctttacaaagctatgaa |
43135035 |
T |
|
| Q |
219 |
tttgatgttattttatttttcttaaagctgaattgaaccctaaaagtatgtgaaaaattaaaaccttgatttatcaatcttaacccacccaaacccaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43135034 |
tttgatgttattttatttttcttaaagctgaattgaacccaaaaagtatgtgaaaaattaaaaccttgatttatcaatcttaacccacccaaacccaaac |
43134935 |
T |
|
| Q |
319 |
acatgaaataagtccatgaaaaggggttccactaaagaggctcacccatgtgcatttctatctcagttttgctctcagcgtgtcattgtgaccagttcac |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43134934 |
acatgaaataagtccatgaaaaggagttccactaaagaggctcacccatgtgcatttctatctcagttttgctctcagcgtgtcattgtgaccagttcac |
43134835 |
T |
|
| Q |
419 |
ccatcttcgttgttttccgaactcatgcaaacaatttgaaacttccaagtatgttgtcgggacacttttttgtgtgcctttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43134834 |
ccatcttcgttgttttccgaactcatgcaaacaatttgaaacttccaagtatgttgtcgggacacttttttgtgtgcctttg |
43134753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University