View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_27 (Length: 504)
Name: NF13254_low_27
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 47036128 - 47035651
Alignment:
| Q |
19 |
cttttggtccaatgtttggagaattcatgctccagagcgtgttagatactttatttggctagtttgtcatggaagactgttcattgatttgaaaaagtcg |
118 |
Q |
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| T |
47036128 |
cttttggtccaatgtttggagaattcatgctccagagcgtgttagatgctttatttggctagtttgtcatggaagactgttcattgatttgaaaaagtcg |
47036029 |
T |
|
| Q |
119 |
cgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatataga |
218 |
Q |
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| T |
47036028 |
tgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatataga |
47035929 |
T |
|
| Q |
219 |
tgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaatgagattaatatgt |
318 |
Q |
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| T |
47035928 |
tgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttgagcaaacgcaatgagattaatatgt |
47035829 |
T |
|
| Q |
319 |
gaattttgtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcactcgccttcatgctcc |
418 |
Q |
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| T |
47035828 |
gaattttgtggtctggtgaatgtaccatagcttgtcactttttgtggcaatggaagaataaggaggtttgtgttgaaggtttcactcgccttcatgctcc |
47035729 |
T |
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| Q |
419 |
tcgggtgaaataatgtgtttttctcggtagtatgtcaactcatctcaaataaaggaatttgaaaacattgatgatgtc |
496 |
Q |
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| T |
47035728 |
tcgggtgaaataatgtgtttttctcggtagtatgtcaactcatctcaaataaaggaatttgaaaacattgatgctgtc |
47035651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 415
Target Start/End: Original strand, 36571596 - 36571801
Alignment:
| Q |
212 |
atatagatgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaatgagatt |
311 |
Q |
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|||| |||| |||||| ||| ||||| ||||| ||||||||||| || ||||||||||||||||||| |||||| ||| | |||| |||||| || |
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| T |
36571596 |
atatggatgtatttggttccatggaaggatcgcaaagctttctttagaa-gtgattttaaggattggttcgagttaaatttgaacaaaatgaatgaggtt |
36571694 |
T |
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| Q |
312 |
aatatgtgaatttt---gtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcactcgcc |
408 |
Q |
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| T |
36571695 |
agtatgaaaattattgtgtggtctggtgtatgggctataacttgtcactcattgcaacaatgaaagaataagaaggttcatgttgaaggtttcactcgtc |
36571794 |
T |
|
| Q |
409 |
ttcatgc |
415 |
Q |
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| T |
36571795 |
ctcatgc |
36571801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 44495644 - 44495523
Alignment:
| Q |
150 |
tttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatatagatgcatttggctccgtggaaagatcgtgaagc |
249 |
Q |
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|||||||||| |||||| ||||||||||||||| ||||| |||||||| |||| ||||| |||||| |||||| ||| | | | || |||||||||| |
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| T |
44495644 |
tttgtggtaacgaaatttaatcaattttacatgctctccacgagtgtccgctaactaggacgatatgaatgcatctggtttcaggaaaggatcgtgaagt |
44495545 |
T |
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| Q |
250 |
tttctttgaaatgtgattttaag |
272 |
Q |
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| T |
44495544 |
tttctttgaaa-gtgattttaag |
44495523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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