View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_30 (Length: 488)

Name: NF13254_low_30
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_30
NF13254_low_30
[»] chr7 (8 HSPs)
chr7 (19-454)||(4255494-4255939)
chr7 (19-427)||(4260560-4260979)
chr7 (19-429)||(4289198-4289619)
chr7 (21-429)||(4266104-4266523)
chr7 (19-429)||(4297793-4298203)
chr7 (22-429)||(4284502-4284920)
chr7 (42-196)||(4257781-4257935)
chr7 (238-306)||(4258320-4258388)
[»] scaffold0074 (1 HSPs)
scaffold0074 (423-454)||(22028-22059)
[»] chr6 (1 HSPs)
chr6 (423-454)||(24392183-24392214)
[»] chr8 (1 HSPs)
chr8 (426-454)||(24059729-24059757)
[»] chr2 (2 HSPs)
chr2 (426-454)||(19012305-19012333)
chr2 (426-454)||(24370735-24370763)
[»] chr1 (1 HSPs)
chr1 (426-454)||(12059076-12059104)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 4255494 - 4255939
Alignment:
Q  19 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtcc 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  4255494 cttcaagtaaccatgaagaccaattttcagctccattcaacactacatcttttaatgtttccaaagtttcactcaacacttcaacggccaccattagtcc 4255593  T
Q  119 atcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagtag-----------cgattcctg 207  Q
    |||||||||||||||||||| ||||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||           |||||||||    
T  4255594 atcttcccccaataactcacctgttttaacaatttcaagtcatgttccaatacaatttccaaaatatgttgcaggagtaggtgctcctaaacgattcctg 4255693  T
Q  208 caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4255694 caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca 4255793  T
Q  308 attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  4255794 attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagc-tttcgatatccgaacgagatatttcaaataaccctct 4255892  T
Q  408 aaatgaatcttcaggaacttgatgtagtaaatccgcaagtgcacggt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4255893 aaatgaatcttcaggaacttgatgtagtaaatccgcaagtgcacggt 4255939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 4260979 - 4260560
Alignment:
Q  19 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| || |||| |||||| ||||| |||  |||    
T  4260979 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcacttaacatttcaacagccacaattaatcc 4260880  T
Q  119 atcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagtag-----------cgattcctg 207  Q
    || ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |           |||||||||    
T  4260879 attttctccaaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcgttggttctaaacgattcctg 4260780  T
Q  208 caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca 307  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4260779 caatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgaca 4260680  T
Q  308 attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct 407  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  4260679 agtgaagatttttattctcagtcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccaaacgagataattgaaataaccctct 4260580  T
Q  408 aaatgaatcttcaggaactt 427  Q
    |||||||||||| |||||||    
T  4260579 aaatgaatcttctggaactt 4260560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 4289198 - 4289619
Alignment:
Q  19 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| ||||| ||| ||||    
T  4289198 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactcaacacttcaacagccacaattagtcc 4289297  T
Q  119 atcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagt-----------agcgattcctg 207  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |           | ||||| |      
T  4289298 atcttcccccaataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacga 4289397  T
Q  208 caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca 307  Q
    ||||| ||||| ||| |||||| |||||| |||||||||||||  || ||||||| ||| |||||| |||||||||| |||||| | ||||| |||||||    
T  4289398 caatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatacaacaaaagttgaca 4289497  T
Q  308 attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct 407  Q
      ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  4289498 ggtgaagattttttttctcgttcctattacccttttgttttgacactacaaattccttaagcttttcgatatccaaacgagataattgaaataatcctct 4289597  T
Q  408 aaatgaatcttcaggaacttga 429  Q
    |||||||||||| |||||||||    
T  4289598 aaatgaatcttctggaacttga 4289619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 4266523 - 4266104
Alignment:
Q  21 tcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtccat 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  4266523 tcaagtaaccatgaagaccaattttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccat 4266424  T
Q  121 cttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagtag-----------cgattcctgca 209  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||| | |           ||||| |  ||    
T  4266423 cttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgaca 4266324  T
Q  210 atcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgacaat 309  Q
    ||| ||||| ||| |||||| |||||| |||||||||||||  || | ||||| ||| |||||| |||||||||| |||||| | ||||| |||||||      
T  4266323 atcaatattcaaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgacagg 4266224  T
Q  310 tgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctctaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  4266223 tgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatattcgaacgagataattgaaataaccctctaa 4266124  T
Q  410 atgaatcttcaggaacttga 429  Q
    |||||||||| || ||||||    
T  4266123 atgaatcttctgggacttga 4266104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 4297793 - 4298203
Alignment:
Q  19 cttcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtcc 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||  | || ||| ||||    
T  4297793 cttcaagtaacaatgaagaccaattttcagctccagtcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaactacaattagtcc 4297892  T
Q  119 atcttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagt-----------agcgattcctg 207  Q
    || ||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |           | ||| |||      
T  4297893 attttctccaaataactcacttgttttaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggaattggctgatctaaacgagtccga 4297992  T
Q  208 caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca 307  Q
    ||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||           ||||||||   |||||||||||||    
T  4297993 caatcgatattcaaacccatcacaacatttttgttctcaattttctcggctttcattctacatac-----------caatagatagtacaaatgttgaca 4298081  T
Q  308 attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct 407  Q
    | |||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  4298082 aatgaagacttttattctcgttcctagtaccctcttgttttaacactacaaattccttaagctttttgatatccgaacgagataattgaaataaccctct 4298181  T
Q  408 aaatgaatcttcaggaacttga 429  Q
    |||||||||||| |||||||||    
T  4298182 aaatgaatcttctggaacttga 4298203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 4284502 - 4284920
Alignment:
Q  22 caagtaacaatgaagaccaattttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtccatc 121  Q
    |||||||| ||||| ||  ||||||||||||||| |||||| |||||||||| |||||||||||||| |  | ||||||||| ||||| ||| | |||||    
T  4284502 caagtaacgatgaacacatattttcagctccatttaacactacatcttttaaagtttccaaagcttcacctagcacttcaaccgccacgattagcccatc 4284601  T
Q  122 ttcccccaataactcacttgttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagtag-----------cgattcctgcaa 210  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| |           | |||||  |||    
T  4284602 tttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacaattccgacaa 4284701  T
Q  211 tcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgacaatt 310  Q
    || ||||| ||| |||||| |||||| |||||||||||||  |  |||||||||||  ||||| | |||||||| || ||| | ||||| |||||||| |    
T  4284702 tcaatattcaaagccatcagagcatttttgttctcaatttctttagctttcattctgtatacccaggcataagctatggatacaacaaaagttgacaagt 4284801  T
Q  311 gaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctctaaa 410  Q
    |||| | ||| ||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||| ||||||||  ||||||||||||||||||    
T  4284802 gaaggtattttttctcattcctagtagccttttgttttgacactaaaaattccttaagctatacgatatccaaacgagatcattgaaataaccctctaaa 4284901  T
Q  411 tgaatcttcaggaacttga 429  Q
    ||||||||| |||||||||    
T  4284902 tgaatcttctggaacttga 4284920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 4257781 - 4257935
Alignment:
Q  42 ttttcagctccattcaacactccatcttttaatgtttccaaagcttctctcaacacttcaacggccaccattggtccatcttcccccaataactcacttg 141  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||| ||| |||||| ||| || ||||||||| |||    
T  4257781 ttttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaaccacaattagtccattttctccaaataactcatttg 4257880  T
Q  142 ttttaacaattgcaagtcttgctccaatacagtttccaaaatatgttgcaggagt 196  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4257881 ttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagt 4257935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 4258320 - 4258388
Alignment:
Q  238 ttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgac 306  Q
    |||||||||| ||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  4258320 ttgttctcaagtttttctgctttcagtctacataccaatgcataagcaatagataccacaaatgttgac 4258388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Original strand, 22028 - 22059
Alignment:
Q  423 aacttgatgtagtaaatccgcaagtgcacggt 454  Q
    ||||||||||||||||||||||||||||||||    
T  22028 aacttgatgtagtaaatccgcaagtgcacggt 22059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Original strand, 24392183 - 24392214
Alignment:
Q  423 aacttgatgtagtaaatccgcaagtgcacggt 454  Q
    ||||||||||||||||||||||||||||||||    
T  24392183 aacttgatgtagtaaatccgcaagtgcacggt 24392214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 24059757 - 24059729
Alignment:
Q  426 ttgatgtagtaaatccgcaagtgcacggt 454  Q
    |||||||||||||||||||||||||||||    
T  24059757 ttgatgtagtaaatccgcaagtgcacggt 24059729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 19012305 - 19012333
Alignment:
Q  426 ttgatgtagtaaatccgcaagtgcacggt 454  Q
    |||||||||||||||||||||||||||||    
T  19012305 ttgatgtagtaaatccgcaagtgcacggt 19012333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 24370735 - 24370763
Alignment:
Q  426 ttgatgtagtaaatccgcaagtgcacggt 454  Q
    |||||||||||||||||||||||||||||    
T  24370735 ttgatgtagtaaatccgcaagtgcacggt 24370763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 12059076 - 12059104
Alignment:
Q  426 ttgatgtagtaaatccgcaagtgcacggt 454  Q
    |||||||||||||||||||||||||||||    
T  12059076 ttgatgtagtaaatccgcaagtgcacggt 12059104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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