View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_31 (Length: 477)
Name: NF13254_low_31
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 41244557 - 41244237
Alignment:
| Q |
1 |
gactgtaggacaaagatagtttgtaaatcaagttttagggtattagtaagctcctttagagattatgcacaaagtcagggtcaggctcctatgctaatta |
100 |
Q |
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| T |
41244557 |
gactgtaggagaaagatagcttgtaaatcaagttttagggtattagtaagctcctttagagattatgcacaaagtcagggtcaggctcctatgctaatta |
41244458 |
T |
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| Q |
101 |
catgatgtattaggtagatacttttggtaagccacattgacataattcatgatacatatattttgtttcatgaatcattccatggttagagatgtttgat |
200 |
Q |
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| T |
41244457 |
catgatgtatcaggtagatacttttggtaagccacattggcataattcatgatacatatattttgtttcatgaatcattccatggttagagatgtttgat |
41244358 |
T |
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| Q |
201 |
aggcttacgcggatctagataagctacactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacaca |
300 |
Q |
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| T |
41244357 |
aggcttacgcggatctagataagctacactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacaca |
41244258 |
T |
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| Q |
301 |
acataaatgggaatgtgggac |
321 |
Q |
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| T |
41244257 |
acataaatgggaatgtgggac |
41244237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 382 - 460
Target Start/End: Complemental strand, 41244177 - 41244099
Alignment:
| Q |
382 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatg |
460 |
Q |
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| T |
41244177 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatg |
41244099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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