View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_33 (Length: 467)
Name: NF13254_low_33
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 52800613 - 52800456
Alignment:
| Q |
16 |
acacacatatgcatatttatata----catgatttagggatcaataagtcaccaaagaaattaatttgtaatacttatatacctaatctccttgcgaaga |
111 |
Q |
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| T |
52800613 |
acacacatatgcatatttatatatatacatgatttagggatcaataagtcaccaaagaaattaatttgtaatacttatatacctaatctccttgcgaaga |
52800514 |
T |
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| Q |
112 |
ttcctattgacatctttcagtttcttcaagttctcttgcatattctaaggaacaagac |
169 |
Q |
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| T |
52800513 |
ttcctattgacatctttcagtttcttcaagttctcttgcatattctaaggaacaagac |
52800456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 317 - 449
Target Start/End: Complemental strand, 52800290 - 52800158
Alignment:
| Q |
317 |
atattataaatctagatagataaatagagaagctagggttagagaaagaaacatacgaggcggaggggctaatgtattcatgaagcttgccagtgctgga |
416 |
Q |
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| T |
52800290 |
atattataaatctagatagataaatagagaagctagggttagagaaagaaacatacgaggcggaggggctaatgtattcatgaagcttgccagtgctgga |
52800191 |
T |
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| Q |
417 |
aaacataataatagaaaccttagcatcacaaag |
449 |
Q |
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| T |
52800190 |
aaacataataatagaaaccttagcatcacaaag |
52800158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 52800403 - 52800324
Alignment:
| Q |
222 |
ggatctaacctcataatgagagttccacagatcaattcctacagtcatctgatactgatcgaaaaactgctttgttctgc |
301 |
Q |
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| T |
52800403 |
ggatctaacctcataatgagagttccacagatcaattcctacagtcatctgatactgatcgaaaaactgctttgttctgc |
52800324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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