View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_39 (Length: 440)
Name: NF13254_low_39
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 53117843 - 53118244
Alignment:
| Q |
20 |
gagcacagacttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatg |
119 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
53117843 |
gagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattcaattcagtatatg |
53117942 |
T |
|
| Q |
120 |
cattgcaaagctgaaaattaacagaaaaacagtgacaa-gaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53117943 |
cattgcaaagctgaaaattaacagaaaaacagtgacaaagaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacc |
53118042 |
T |
|
| Q |
219 |
tggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgtagcttaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53118043 |
tggttttgatctgtgccactttgccaaaggactcatgatctcgggatgatttatgatgaatgtaggactgacacgtgtttcttccaaaatgtagcttaca |
53118142 |
T |
|
| Q |
319 |
agctgcaatatggaccaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcaga |
418 |
Q |
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| T |
53118143 |
agctgcaatat-gaccaaacttagaatcataaccacaacttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcaga |
53118241 |
T |
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| Q |
419 |
tca |
421 |
Q |
| |
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||| |
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| T |
53118242 |
tca |
53118244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 175 - 421
Target Start/End: Original strand, 53108673 - 53108919
Alignment:
| Q |
175 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
274 |
Q |
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||||||||||||||||||||||||| |||||| | ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53108673 |
acttcatgcttattgacgaacaattcaaaacgttcggtcaggcctggttttaatctgtgccactttgccaaaggactcatgatctcgggatgatttatga |
53108772 |
T |
|
| Q |
275 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctgcaatatggaccaaacttagaatca-taaccacaacttattaagcaaatgac |
373 |
Q |
| |
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||||||||||| |||||| | |||||||||||| || | |||||||||||| | ||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
53108773 |
tgaatgtaggattgacacatgtttcttccaaaaagtgtccgacaagctgcaatgt-gaccaaacttagaatcattaaccacagcttattaatcaaatgac |
53108871 |
T |
|
| Q |
374 |
tgatattgtgagtgaagaatgttccataattctatgcaaagcagatca |
421 |
Q |
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| T |
53108872 |
taatattgtgagttaagaatgtcccatatttctatgcaaagcagatca |
53108919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 53113601 - 53113744
Alignment:
| Q |
35 |
ttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaagctgaa |
134 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
|
| Q |
135 |
aattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
178 |
Q |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaactt |
53113744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 53108484 - 53108632
Alignment:
| Q |
30 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
129 |
Q |
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||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |
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| T |
53108484 |
ttaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaaag |
53108583 |
T |
|
| Q |
130 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
178 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
53108584 |
ctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaactt |
53108632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 330
Target Start/End: Original strand, 53113813 - 53113932
Alignment:
| Q |
211 |
gtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgt |
310 |
Q |
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||||| |||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||| || |
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| T |
53113813 |
gtcaggcctggtttcgttctgtgccactttgccaaagggctcatgatctcgggatgatttatgatgaatgtaggattgacacatgtttcttccaaaaagt |
53113912 |
T |
|
| Q |
311 |
agcttacaagctgcaatatg |
330 |
Q |
| |
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|| | ||||||| |||||| |
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| T |
53113913 |
ggcctgcaagctgaaatatg |
53113932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 53126288 - 53126436
Alignment:
| Q |
30 |
ttaatttagtaagctaatctttacataataccttgagttgttcggcaaatctctgacattggactactggatcattcaattcagtatatgcattgcaaag |
129 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||| |||||||||| || ||| || || |||| ||||| ||||||||||||||||||||| |
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| T |
53126288 |
ttaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaag |
53126387 |
T |
|
| Q |
130 |
ctgaaaattaacagaaaaacagtgacaagaataaaaaagttgttaactt |
178 |
Q |
| |
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||||||| ||||| |||||| ||| |||||| || ||| |||| |||| |
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| T |
53126388 |
ctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcactt |
53126436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 53126475 - 53126623
Alignment:
| Q |
175 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
274 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||||| |||| |||||||||||| | || ||||| ||||| |||| |
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|
| T |
53126475 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtttttctctgtgcgacttggccaaaggactcattatttcggggtgattcatga |
53126574 |
T |
|
| Q |
275 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctg |
323 |
Q |
| |
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||||||||||| |||||| |||||||||||| || || ||||||||| |
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| T |
53126575 |
tgaatgtaggattgacacacgtttcttccaaaaagtggcctacaagctg |
53126623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 15841201 - 15841087
Alignment:
| Q |
193 |
aacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacac |
292 |
Q |
| |
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||||||| |||||| | ||||| |||||||||| |||||||||||| |||||||||||| | ||||| || || |||||||||||||||||| |||||| |
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|
| T |
15841201 |
aacaattcaaaacgttcagtcaggcctggttttgttctgtgccacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacac |
15841102 |
T |
|
| Q |
293 |
gtttttcttccaaaa |
307 |
Q |
| |
|
| |||| ||||||| |
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|
| T |
15841101 |
atgtttcctccaaaa |
15841087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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