View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_40 (Length: 434)
Name: NF13254_low_40
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 14680410 - 14680823
Alignment:
| Q |
1 |
aggagtatgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaacatttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14680410 |
aggagtatgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaacatttac |
14680509 |
T |
|
| Q |
101 |
gacatatctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggatcaattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14680510 |
gacatatctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggatcaattaa |
14680609 |
T |
|
| Q |
201 |
ttcatcaatacagtgtcggtgagcacgtctaattgtatgttctccagtcaccaaatactcatatcatatccgtgacaactgaaaacagcaattcctttan |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14680610 |
ttcatcaatacagtgtcggtgagcacgtctaattgtatgttctccagtcaccaaatactc--atcatatccgtgacaactgaaaacagcaattcctttat |
14680707 |
T |
|
| Q |
301 |
nnnnnnnnnnnnaataccatcggtgtatgttgtatatatttacataggtttttagttttacggaatggaaatgcaagtcgttggttgtttagttacatcg |
400 |
Q |
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| T |
14680708 |
ttttatttttttaataccatcggtgtatgttgtatatatttacataggtttttagttttacagaatggaaatgcaagttgttggttgtttagttacatca |
14680807 |
T |
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| Q |
401 |
gtgtatgatgtcattc |
416 |
Q |
| |
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||||||||||| |||| |
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| T |
14680808 |
gtgtatgatgtaattc |
14680823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 27722688 - 27722913
Alignment:
| Q |
7 |
atgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaacatttacgacata |
106 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722688 |
atgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttacgacata |
27722787 |
T |
|
| Q |
107 |
tctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggatcaattaattcatc |
206 |
Q |
| |
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| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||| |
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| T |
27722788 |
tgcatcaaatcagatttttgactttaggcagtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaattcatc |
27722887 |
T |
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| Q |
207 |
aatacagtgtcggtgagcacgtctaa |
232 |
Q |
| |
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| T |
27722888 |
aatacagtgtcgataagcacttctaa |
27722913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 27734633 - 27734862
Alignment:
| Q |
3 |
gagtatgcaatcttcatcaaaggtatcaaacataacacatttacat--ggactgtttattgcaagatcacgcaaccgagatctggtaggcaaacatttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | |||||| |||| ||||| |||||||||| |||||| |||||| |||||||| ||||||| |
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|
| T |
27734633 |
gagtatgcaatcttcatcaaaggtattacacataacagagttacatatggacagtttactgcaagatcatgcaacctagatctcgtaggcaaccatttac |
27734732 |
T |
|
| Q |
101 |
gacatatctgccaaatcagatttt-----tgactttagctg---------gtgcccataactttcaaatgagattccatcgaccatgaactatatgatga |
186 |
Q |
| |
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||||||||| ||||||||||||| |||| || | | ||| || |||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
27734733 |
gacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgaccatggactttaggatga |
27734832 |
T |
|
| Q |
187 |
gttggatcaattaattcatcaatacagtgt |
216 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
27734833 |
gttggatcaattaatttatcaatacagtgt |
27734862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 27734974 - 27735021
Alignment:
| Q |
331 |
tgtatatatttacataggtttttagttttacggaatggaaatgcaagt |
378 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| ||| |||| |
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| T |
27734974 |
tgtatatagttacataggtttttagttttatggaatggagatgaaagt |
27735021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 27722521 - 27722554
Alignment:
| Q |
8 |
tgcaatcttcatcaaaggtatcaaacataacaca |
41 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
27722521 |
tgcaatcttcatcaaaggtatcacacataacaca |
27722554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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