View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_42 (Length: 424)
Name: NF13254_low_42
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 10818982 - 10819375
Alignment:
| Q |
17 |
acatagtttagaggcttattggagcatacacggatatataacaaaagtagaatcaaagtaggaaagatacactcactaggcagaaattcacataaaagga |
116 |
Q |
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| T |
10818982 |
acatagtttagaggcttattagagcatacacggatatataacaaaagtagaatcaaagtagaaaagatacactcactaggcagaaattcacataaaagga |
10819081 |
T |
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| Q |
117 |
aacataacgagttacaaagttatttttcttcttagtatttatttcccatcaaactaagaagagaacatgttagaagcgcttggtagcttgacttctccct |
216 |
Q |
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| T |
10819082 |
agcataacgagttacaaagttatttttcttcttagtatttatttcccatcaaactaagaagagaacatgttagaagcgcttggtagcttgacttctccct |
10819181 |
T |
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| Q |
217 |
tttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatgtcccaatcagctccaatgtcctt |
316 |
Q |
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| T |
10819182 |
tttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatgtcccaatcagctccaatgtcctt |
10819281 |
T |
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| Q |
317 |
tgctaagctcatcaatatgctgtagggcaccttcacaggtacatccaccattgttgtgtcctttgccttcaaagaccctggatctggtattgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819282 |
tgctaagctcatcaatatgctgtagggcaccttcacaggtacatccaccattgttgtgtcctttgccttcaaagaccctggatctggtattgtc |
10819375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 30032014 - 30031891
Alignment:
| Q |
194 |
gcttggtagcttgacttctcccttttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatg |
293 |
Q |
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|||||| ||||||| |||||||||||| |||||||||||||||| || ||||||| ||| || |||||||| ||||| | |||||||||||| |||||| |
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| T |
30032014 |
gcttgggagcttgatctctcccttttgacaaagaggaatggtgaaattgccaataataggtagatcaataacgagaccaatatccaattgataatcaatg |
30031915 |
T |
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| Q |
294 |
tcccaatcagctccaatgtccttt |
317 |
Q |
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| T |
30031914 |
tcccaatcagcaccaatatccttt |
30031891 |
T |
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