View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_45 (Length: 411)

Name: NF13254_low_45
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_45
NF13254_low_45
[»] chr5 (1 HSPs)
chr5 (23-393)||(26914900-26915273)
[»] chr1 (1 HSPs)
chr1 (8-391)||(51182639-51183007)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 26915273 - 26914900
Alignment:
Q  23 ctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggatt 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26915273 ctgatgatcataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctgatttcatgttttggattttttattgctggatt 26915174  T
Q  123 gcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgtt 222  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26915173 gcccaaaggtgcgatgttaagatgaaaacttgttcctgaagagtctaattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgtt 26915074  T
Q  223 ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaaga---ttatctcgttttcttgatgtacctgactctgaatgtatat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  26915073 ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattattatctcgttttcttgatgtacctgactctgaatgtatat 26914974  T
Q  320 gaaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccg 393  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26914973 ggaatttaggctctccttgcaataatggatagtcctctttgcttgtctggtagagtaagcgctgtattcatccg 26914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 51183007 - 51182639
Alignment:
Q  8 cgaagaatatgaatgctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggatt 107  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  51183007 cgaaaaatatgaatcctgatgattataggccagatattgttcatcaggttagccactgttttcattactttgacaatgag--------atgttttggatt 51182916  T
Q  108 ttttattgctggattgcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttat 207  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||         || |||||||||||    
T  51182915 ttttattgctggattgcccaaaggcgcgacgttgagatgaaaacttgttcttgaagagtctaattacaacctaacttc--------ctctgaatagttat 51182824  T
Q  208 attctgttttatgttccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattat---ctcgttttcttgatgtacctg 304  Q
    ||| ||||||||||||||||||||||||||||||||||| || |   | | | |||  ||||||||||||||||||   ||| ||||||||||||||||     
T  51182823 attttgttttatgttccattgtagttttcttagaaaagtattatt--ataaaaccctgaaaagtttgaaagattattatctcattttcttgatgtaccta 51182726  T
Q  305 actctgaatgtatatgaaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatc 391  Q
    |||||||||||||||| | |||||||||||||||||||| || ||||| | ||||||||| ||||||||||||||||| ||||||||    
T  51182725 actctgaatgtatatggattttaggctctccttgcaatattgagtagtgcactttgcttggctggtagagtaagcgctatattcatc 51182639  T

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