View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_49 (Length: 401)
Name: NF13254_low_49
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 29280974 - 29280599
Alignment:
| Q |
8 |
caaagcgatggtgaagacaaccaaaaatgaaattnnnnnnnttccgggttattcgccttaagccaccattcggaatggagcttaatactatcaagaagtt |
107 |
Q |
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| T |
29280974 |
caaagagatggcgaagaccaccaaaaatgaaaataaaaaaattctggtttattcgccttaagccaccattaggaatggagcttaatactatcaagaagtt |
29280875 |
T |
|
| Q |
108 |
gattatgagacaatattgtgttgttaaaacttctctagttgtgttcctaataacccaaagacaaaccaaccagacaacctgttctttttgaaagcatgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280874 |
gattatgagacaatattgtgttgttaaaacttctctagttgtgttcctaataacccaaagacaaaccaaccagacaacctgttctttttgaaagcatgac |
29280775 |
T |
|
| Q |
208 |
aatcaatatccgatgattgccgccctttatccagtacccttcgataggaataagaacatgattaacccaaataatgttcacatttttatctaaataaatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29280774 |
aatcaatatccgatgattgccgccctttatccagtacccttcgataggaataagaacatgattcacccaaataatgttcacatttttatctaaataaatg |
29280675 |
T |
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| Q |
308 |
tttttcttaaaagggaaataaataaatgttgtacttttggtattgagaacctaatatattttcctaatggaagtcct |
384 |
Q |
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| T |
29280674 |
-ttttcttaaaagggaaataaataaatgttgtactttgggtattgagaacctaatatattttcttaatggaagtcct |
29280599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7411009 - 7410965
Alignment:
| Q |
80 |
gaatggagcttaatactatcaagaagttgattatgagacaatatt |
124 |
Q |
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| T |
7411009 |
gaatggagcttaatactatgaagaagttgatcaagagtcaatatt |
7410965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 38068615 - 38068651
Alignment:
| Q |
80 |
gaatggagcttaatactatcaagaagttgattatgag |
116 |
Q |
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| T |
38068615 |
gaatggagcttaatactatcaaaaagttgcttatgag |
38068651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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