View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_50 (Length: 396)
Name: NF13254_low_50
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 38081286 - 38080906
Alignment:
| Q |
16 |
cattagagatgttgtgcgaattacaaatacagaaaaccaaaactatat----ggaattaaacacaaa------------cgagtgaatattatttcacat |
99 |
Q |
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| T |
38081286 |
cattagagatgttgtgcgaattacaaatacagaaaaccaaaactatatatatggaattaaacacaaaatacttaagacacgagtgaatattatttcacat |
38081187 |
T |
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| Q |
100 |
gtttaagatcatggcctgctcaatgctctaaaataagccggcaggagaaaagacacaatcaaatgttggtaggtacatatgctaaccaacatatcaaaat |
199 |
Q |
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| T |
38081186 |
gtttaagatcatggcctgctcaatgctctaaaataagccggcaggagaaaagacacaatcaaatgttggtaggtacatatgctaaccaacatatcaaaat |
38081087 |
T |
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| Q |
200 |
ataacaacaaataaaggagcctatatgggataagttttaggcacgcacataagaactgagttatcccaaattcctcctatatatataaccgaaccattac |
299 |
Q |
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| T |
38081086 |
ataacaacaaataaaggagc----atgggataagttttaggcacgcacataagaactgagttatcccaaattcctcc----tatataaccgaaacattac |
38080995 |
T |
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| Q |
300 |
ttcacttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcatagatctctgct |
388 |
Q |
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| T |
38080994 |
ttcacttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcatagatctctgct |
38080906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 39701145 - 39701073
Alignment:
| Q |
305 |
ttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcat |
377 |
Q |
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| T |
39701145 |
ttcacttgtactcgaggatcatgttgttctctggagccaatccaacacaagctctcatgatgttttcaagcat |
39701073 |
T |
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