View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_51 (Length: 395)
Name: NF13254_low_51
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_51 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 4368980 - 4369343
Alignment:
| Q |
15 |
atactcttagagtggacctaaacaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4368980 |
atactcttagagtggacctaaacaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaa |
4369079 |
T |
|
| Q |
115 |
cgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4369080 |
cgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccc |
4369179 |
T |
|
| Q |
215 |
caccaaattggtggaatctccatatcagctgtaattatggctattggatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4369180 |
caccaaattggtggaatctccatatcagccgtaattatggctattggatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatct |
4369279 |
T |
|
| Q |
315 |
tagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgtttaacttt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4369280 |
tagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgtttaacttt |
4369343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 4364576 - 4364943
Alignment:
| Q |
17 |
actcttagagtggacctaaacaaatacaaata------agattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatct |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
4364576 |
actcttagagtggacctaaacatatacaaatacaattcagattagacagcagtaggtattttaaaattcatattcaatagtttttatcatcttaccatct |
4364675 |
T |
|
| Q |
111 |
cgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacga |
210 |
Q |
| |
|
|||| || || ||| | || || |||||| |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
4364676 |
cgaaggcttctggaaaacggggactcccataagaactgcttgtcaagcttaatacacggattgcaaatttctgtagctctggtggtccatctactaacga |
4364775 |
T |
|
| Q |
211 |
tccccaccaaattggtggaatctccatatcagctgtaattatggctattggatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttca |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
4364776 |
tgcccaccaaattggtggaatctccatatcagctgtaattacggctattggatgaccgaattgattagcctgtctatcgaaatcatcaagttgaatttca |
4364875 |
T |
|
| Q |
311 |
atcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgtttaacttt |
378 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4364876 |
atcttcgatctttctttgtgattggtcaccatccttgttatacaatgttgtagaccacgtttaacttt |
4364943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 61 - 374
Target Start/End: Original strand, 4359249 - 4359562
Alignment:
| Q |
61 |
agtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagctt |
160 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | |||||||||||||||||||||| || | | || | | ||| |||||| |||||| |||||||| | |
|
|
| T |
4359249 |
agtacgtattttacaattcatattcaatattctttatcatcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagcat |
4359348 |
T |
|
| Q |
161 |
aatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattg |
260 |
Q |
| |
|
|||||||||||||| || || ||||| |||| | ||||| | || ||| ||||||||||||||||| ||||| | |||| |||||||||||||||| |
|
|
| T |
4359349 |
aatacacgaattgcgaaattctggagatctgcatattcatctgcgaaagatgcccaccaaattggtggagtctcctcaccagcagtaattatggctattg |
4359448 |
T |
|
| Q |
261 |
gatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttg |
360 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
4359449 |
gatgaccaaaatgattagcctgtttatcgaaatcttcaagttgaatttcaatcctagatctttcttcaggattggctaccatccttgttatacaatgttg |
4359548 |
T |
|
| Q |
361 |
tagaccacgtttaa |
374 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
4359549 |
tagactatgtttaa |
4359562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 137 - 378
Target Start/End: Complemental strand, 5726580 - 5726339
Alignment:
| Q |
137 |
ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcca |
236 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| | ||||||| | ||| ||||||||| ||||||| |||| |
|
|
| T |
5726580 |
ccataagaactgcatgccaagcataatacacgaattgcaaatttctggagctctggttgaccatctataatagatgcccaccaaactggtggagtctctt |
5726481 |
T |
|
| Q |
237 |
tatcagctgtaattatggctattggatgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggt |
336 |
Q |
| |
|
||||||||||| || | ||| || ||||| || ||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||| | |
|
|
| T |
5726480 |
catcagctgtaactacaggtatgggctgaccaaaaacatttgcctgtttatcgaaatcctcaagttgaatttcaatcttagctctttcttcgggatcagc |
5726381 |
T |
|
| Q |
337 |
caccatccttgttatacaatgttgtagaccacgtttaacttt |
378 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
5726380 |
caccatccttgttatacaatcatgtagaccaagcttaacttt |
5726339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 66 - 376
Target Start/End: Original strand, 4383763 - 4384072
Alignment:
| Q |
66 |
gtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatac |
165 |
Q |
| |
|
||||||||||||||| ||| |||| ||||| |||||||||||||||||| ||| | || | | ||| |||||| |||||||||||||||||||||| |
|
|
| T |
4383763 |
gtattttacaattcacattcaatatttttt-tcatcttaccatctcgaaggcactccgattacgctcacccccataagaactgcatgtcaagcttaatac |
4383861 |
T |
|
| Q |
166 |
acgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattggatga |
265 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||| | || | || |||||||| || ||||||||| ||| |||||| |||||||| || ||| |
|
|
| T |
4383862 |
acgacacgcaaatttttggagctccggtagtccctctccaaaggctctccaccaaactgatggaatctcaatacgagctgtccttatggcttcagggtga |
4383961 |
T |
|
| Q |
266 |
ccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagac |
365 |
Q |
| |
|
|| | | || ||| ||||||| |||||||| |||||||||||||| |||| |||||||||| |||| | |||||||||| ||||||||| ||||||| |
|
|
| T |
4383962 |
cccatatagttcgcccgtttatcgaaatcatcgagttgaatttcaattttagctctttcttcgggatcagccaccatcctttttatacaatcgtgtagac |
4384061 |
T |
|
| Q |
366 |
cacgtttaact |
376 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4384062 |
catatttaact |
4384072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 377
Target Start/End: Original strand, 4376189 - 4376499
Alignment:
| Q |
66 |
gtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatac |
165 |
Q |
| |
|
||||||||||||||| ||| |||| ||||| ||||||||||||||| || ||| | || | | ||| |||||| |||||||||||||||||||||| |
|
|
| T |
4376189 |
gtattttacaattcacattcaata-tttttctcatcttaccatctcaaatgcactccgattatgatcacccccataagaactgcatgtcaagcttaatac |
4376287 |
T |
|
| Q |
166 |
acgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattggatga |
265 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| ||| | || | | |||||||| || ||||| ||| || ||||||| ||| ||||| |||||| |
|
|
| T |
4376288 |
acgacatgcaaatttttggagctccggtagtccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacggctacaggatga |
4376387 |
T |
|
| Q |
266 |
ccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagac |
365 |
Q |
| |
|
| | || ||| |||||| |||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
4376388 |
gtcatatcgtttgcccatttatcgaaatcatcaagttgaatttcaatcttagctctctcttcggaatcggccaccatccttgtgatacaatcatgtagac |
4376487 |
T |
|
| Q |
366 |
cacgtttaactt |
377 |
Q |
| |
|
||| |||||||| |
|
|
| T |
4376488 |
cacctttaactt |
4376499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 4415442 - 4415346
Alignment:
| Q |
282 |
gtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgtttaacttt |
378 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||| |||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
4415442 |
gtttatcgaaatcatcaagtcgaatctcaatcttagctctttcttcgggatcggccaccatccttgttatacaattttctagaccacgtttaacttt |
4415346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 377
Target Start/End: Original strand, 4388881 - 4389186
Alignment:
| Q |
63 |
taggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaa |
162 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||| ||||||||||||||| || ||| |||| | | ||| |||||| ||||||||||||||||||| |
|
|
| T |
4388881 |
taggtattttacaattgacattcaatatttttt-tcatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaa |
4388979 |
T |
|
| Q |
163 |
tacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattgga |
262 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| | | | || | | | || ||||| ||| || |||| || |||| ||||| ||| |
|
|
| T |
4388980 |
tacacgacacgcaaatttttggagctctggtagtccctttccgaaggcgctc--------tgatggaacctcattaccagccgtcattacggctacagga |
4389071 |
T |
|
| Q |
263 |
tgaccgaattgattagcctgtttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgta |
362 |
Q |
| |
|
||||| | | || ||| ||||||| ||| |||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
4389072 |
tgacccatatcgttcgcccgtttatcgaaagcatcaagttgaatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgta |
4389171 |
T |
|
| Q |
363 |
gaccacgtttaactt |
377 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4389172 |
gaccacctttaactt |
4389186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 4415688 - 4415533
Alignment:
| Q |
36 |
acaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaacc |
135 |
Q |
| |
|
|||||||||| ||| || || || |||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |||| | | ||| |
|
|
| T |
4415688 |
acaaatacaattaatataagcaagtagtaggtattttacaattcatattcaatgttttttatcatcttaccatctcgtaggcactctgattatgctcacc |
4415589 |
T |
|
| Q |
136 |
accataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctg |
191 |
Q |
| |
|
|||||| |||| ||||||||||| |||| |||||| || ||||||| ||||||| |
|
|
| T |
4415588 |
cccataagaactacatgtcaagctcaatatacgaatggccaatttttttagctctg |
4415533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 373
Target Start/End: Complemental strand, 3595771 - 3595681
Alignment:
| Q |
283 |
tttatcaaaatcatcaagttgaatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgttta |
373 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
3595771 |
tttatcgaaatcatcaagttgaatttcaatcttagctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccaccttta |
3595681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 3595906 - 3595847
Alignment:
| Q |
137 |
ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtcc |
198 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3595906 |
ccataagaacttcatgtcaagcttaatacacga--cacaaatttttggagctctggtagtcc |
3595847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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