View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_52 (Length: 394)
Name: NF13254_low_52
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 54 - 287
Target Start/End: Original strand, 10427126 - 10427361
Alignment:
| Q |
54 |
ttagtattatttatgcagtcaagattaacttatgcattagcaattatacaaaatgaagtagcttagttgatttatttcgtgttgttaatgttaatggata |
153 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10427126 |
ttagtattatttatgtagtgcagattaacttatgcattagca-ttacacaaaatgaagtagcttagtttatttatttcgtgttgttaatgttaatggata |
10427224 |
T |
|
| Q |
154 |
tgcatcaagaagctgactatttattgtgaattttaacaaataaagttatcttcaattactatttgag-aacaaaatcaaaattttataaa--agtgtgtg |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
10427225 |
tgcatcaagaagctgactatttattatgaattttaacaaatagaattatcttcaattactatttgagaaacaaaatcaaaattttctaaaagagtgtgtg |
10427324 |
T |
|
| Q |
251 |
tgttttgcaaataagattctcaaattaagttttcaaa |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10427325 |
tgttttgcaaataagattctcaaattaagttttcaaa |
10427361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 10429037 - 10429081
Alignment:
| Q |
11 |
cataggacgtacatgttttgttaatactcataacacatacatttt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10429037 |
cataggacgtacatgttttgttaatactcataacacatacatttt |
10429081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 10466072 - 10466116
Alignment:
| Q |
11 |
cataggacgtacatgttttgttaatactcataacacatacatttt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10466072 |
cataggacgtacatgttttgttaatactcataacacatacatttt |
10466116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 10430540 - 10430601
Alignment:
| Q |
84 |
tatgcattagcaattatacaaaatgaagtagcttagttgatttatttcgtgttgttaatgttaa |
147 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||| ||||||||| |
|
|
| T |
10430540 |
tatgcaatagcaattacacaaaatgaagtagcttagtttatt--ttttgtgttgctaatgttaa |
10430601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University