View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_53 (Length: 390)

Name: NF13254_low_53
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_53
NF13254_low_53
[»] chr1 (2 HSPs)
chr1 (57-224)||(36078914-36079081)
chr1 (257-321)||(36078833-36078897)
[»] chr8 (1 HSPs)
chr8 (53-139)||(40473683-40473769)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 36079081 - 36078914
Alignment:
Q  57 tagttctatttgttaattttattatttgattaaattaaatttttgtaatcatgtagcaaaacaataatgaccgctgcaacgggcattttattgattaaac 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36079081 tagttctatttgttaattttattatttgattaaattaaatttttgtaatcatgtagcaaaacaataatgactgctgcaacgggcattttattgattaaac 36078982  T
Q  157 tcaatgcatattttatgtgattttccacttgcccatgaacgaacattggaattgcacttaccaaaatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36078981 tcaatgcatattttatgtgattttccacttgcccatgaacgaacattggaattgcacttaccaaaatc 36078914  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 36078897 - 36078833
Alignment:
Q  257 atcttcaacaattttgaattccaaaatcttctccttccatgttcttctgcaattcttctattgtc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36078897 atcttcaacaattttgaattccaaaatcttctccttccatgttcttctgcaattcttctattgtc 36078833  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 40473769 - 40473683
Alignment:
Q  53 ctaatagttctatttgttaattttattatttgattaaattaaatttttgtaatcatgtagcaaaacaataatgaccgctgcaacggg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473769 ctaatagttctatttgttaattttattatttgattaaattaaatttttgtaatcatgtagcaaaacaataatgaccgctgcaacggg 40473683  T

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