View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_54 (Length: 388)
Name: NF13254_low_54
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 36743868 - 36744237
Alignment:
| Q |
15 |
aattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743868 |
aattatttatgttgcagccataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagc |
36743967 |
T |
|
| Q |
115 |
aaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743968 |
aaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggt |
36744067 |
T |
|
| Q |
215 |
tcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctca |
314 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36744068 |
tcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctca |
36744167 |
T |
|
| Q |
315 |
act-----ttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgat |
379 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36744168 |
actttttcttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgat |
36744237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
| Q |
131 |
gacagaatctatgattatgatgtttacaatgat |
163 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
35722340 |
gacagaatctatgattatgatgtctacaatgat |
35722372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
| Q |
69 |
actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
6392194 |
actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg |
6392095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
| Q |
33 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
132 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| |||||||||| |
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|
| T |
6364607 |
cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga |
6364508 |
T |
|
| Q |
133 |
cagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |
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|
| T |
6364507 |
aagaatatatgattatgatgtctacaatgatttggg |
6364472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
| Q |
33 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
132 |
Q |
| |
|
||||||||||| || || ||||||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | | |||| |||||||||| |
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|
| T |
7460806 |
cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga |
7460707 |
T |
|
| Q |
133 |
cagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |
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|
| T |
7460706 |
cagaatatatgattatgatgtctacaatgacttggg |
7460671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
| Q |
33 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
132 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| |||| ||||| | ||||||| | |||||||| ||||||||||||| | |||| |||||||||| |
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|
| T |
6290642 |
cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga |
6290543 |
T |
|
| Q |
133 |
cagaatctatgattatgatgtttacaatgattt |
165 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |
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|
| T |
6290542 |
aagaatatatgattacgatgtctacaatgattt |
6290510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
| Q |
33 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
132 |
Q |
| |
|
||||||||||| ||||| || |||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | | |||| |||||||||| |
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|
| T |
6353734 |
cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga |
6353635 |
T |
|
| Q |
133 |
cagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| |
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|
| T |
6353634 |
aagaatatatgattacgatgtctacaatgatttggg |
6353599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
| Q |
82 |
agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
6411345 |
agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg |
6411259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
| Q |
92 |
actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
|||||||| ||||||||||| | |||| | |||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
6265006 |
actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg |
6264930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
| Q |
92 |
actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
|||||||| |||||||||| || | |||| |||||||||| || ||||||||||| ||||| |||||||||||||| |
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|
| T |
6425365 |
actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg |
6425289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
| Q |
92 |
actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
168 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| |||| |
|
|
| T |
6275831 |
actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg |
6275755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
| Q |
53 |
ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg |
152 |
Q |
| |
|
||||||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | |||| | |||| ||| || |||||||| || |||| |
|
|
| T |
6333298 |
ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg |
6333199 |
T |
|
| Q |
153 |
tttacaatgatttggg |
168 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
6333198 |
tttacaatgacttggg |
6333183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
| Q |
53 |
ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg |
152 |
Q |
| |
|
||||||||| |||| |||||||||| | ||| ||| | |||||||| ||||||||||| | |||| | |||||||| || |||||||| || |||| |
|
|
| T |
6371418 |
ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg |
6371319 |
T |
|
| Q |
153 |
tttacaatgatttggg |
168 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
6371318 |
tctacaatgatttggg |
6371303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
| Q |
140 |
tatgattatgatgtttacaatgatttgggaaatccagat |
178 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6458290 |
tatgattatgatatttataatgatttgggaaatccagat |
6458252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
| Q |
94 |
tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc |
174 |
Q |
| |
|
|||||| ||||||||||||| | | || | |||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
42694465 |
tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc |
42694385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
| Q |
155 |
tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca |
254 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| || | | ||||||| ||||| ||||| ||| || ||| ||| || ||||||||||||||||| ||| |
|
|
| T |
36923579 |
tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca |
36923678 |
T |
|
| Q |
255 |
gaaaaccgaccaaaacaggttag |
277 |
Q |
| |
|
|| |||| ||||| |||||||| |
|
|
| T |
36923679 |
gagaacctgccaaatcaggttag |
36923701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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