View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_56 (Length: 388)
Name: NF13254_low_56
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 20694563 - 20694928
Alignment:
| Q |
17 |
aaaatcctgcatttctagttgagtatgttatcttccgttattgagcttagtttccactgtcagattagataacctcgatgatcgacttgtacatacaaag |
116 |
Q |
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| T |
20694563 |
aaaatcctgcatttctagttgagtatgttatcttccgttattcagcttagtttccgctgtcagattagataacctcgaggatcgacttgtacatgcaaag |
20694662 |
T |
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| Q |
117 |
ttgttgcttttcttattaatgtgaagtttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgt |
216 |
Q |
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| T |
20694663 |
ttgttgcttttcttattaatgtgaagtttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgt |
20694762 |
T |
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| Q |
217 |
ttagcaacagactcctaactatatattcatgtgaaaagataccttgaaagtgaggtgaattttgggttgcctgatacgcattctgatcgaatcttcaagc |
316 |
Q |
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| T |
20694763 |
ttagcaacagactcctaactatatattcatgtgaaaagataccttgaaagtgaggtgaattttgggttgccagatacgcattctgatcgaatcttcaagc |
20694862 |
T |
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| Q |
317 |
ctcatcagtaagcaagtaggggtgattcaaggtttattatatgttgttttgctttgatgatgtcca |
382 |
Q |
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| T |
20694863 |
ctcatcagtaagcaagtaggggtgattcaaggtttattatatgttgttttgctttgatgttgtcca |
20694928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 9340167 - 9340040
Alignment:
| Q |
128 |
cttattaatgtgaagtttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgtttagcaacaga |
227 |
Q |
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| T |
9340167 |
cttattattatgaactttctaaactagatgtaacaatgttgttgggt-ttgattatcttctttcattgttacttttgcagactatatgtttaccaacaaa |
9340069 |
T |
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| Q |
228 |
ctcctaactatatattcatgtgaaaagat |
256 |
Q |
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| T |
9340068 |
ctcctaattgcatattcatatcaaaagat |
9340040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 4439522 - 4439438
Alignment:
| Q |
141 |
agtttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgtttagcaaca |
225 |
Q |
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| T |
4439522 |
agtttctaaactagatgtaacaacattgatgaccgtttattatcttctttccttgttacttttgcagactatatgtttagcaaca |
4439438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 4428439 - 4428387
Alignment:
| Q |
36 |
tgagtatgttatcttccgttattgagcttagtttccactgtcagattagataa |
88 |
Q |
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| T |
4428439 |
tgagtatgttatcttgcattattttgcttagtttccgttgtcagattagataa |
4428387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 9170587 - 9170456
Alignment:
| Q |
143 |
tttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgtttagcaacagactcctaactatatat |
242 |
Q |
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| T |
9170587 |
tttctaaactagatgtaacaatgttgatgagc-ttgattatcttcttttattgttactttttcagactacatgttcagcaccaaactcctaatcacatat |
9170489 |
T |
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| Q |
243 |
tcatgtgaaaagataccttgaaagtgaggtgaa |
275 |
Q |
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|||| ||||||||| ||||||| |||| |||| |
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| T |
9170488 |
tcatctgaaaagatgtcttgaaaatgagatgaa |
9170456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 9159841 - 9159972
Alignment:
| Q |
143 |
tttctaaactagatgtaaaaattttgatgcctatttattatcttcttccatcgttgcttttgcagactacatgtttagcaacagactcctaactatatat |
242 |
Q |
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| T |
9159841 |
tttctaaactagatgtaacaatgttgatgagc-ttgattatcttcttttattgttacttttgcagactgcatgttcagcaccaaactcctgatcacatat |
9159939 |
T |
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| Q |
243 |
tcatgtgaaaagataccttgaaagtgaggtgaa |
275 |
Q |
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|||||| ||||||| ||||||| ||| ||||| |
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| T |
9159940 |
tcatgtaaaaagatgtcttgaaaatgaagtgaa |
9159972 |
T |
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