View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_57 (Length: 376)

Name: NF13254_low_57
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_57
NF13254_low_57
[»] chr8 (3 HSPs)
chr8 (2-218)||(10382813-10383021)
chr8 (220-354)||(10382643-10382775)
chr8 (241-354)||(9484308-9484419)
[»] chr3 (1 HSPs)
chr3 (242-354)||(41639032-41639141)
[»] chr5 (3 HSPs)
chr5 (252-354)||(25074930-25075029)
chr5 (252-354)||(25132899-25132998)
chr5 (322-354)||(3136044-3136076)
[»] chr4 (1 HSPs)
chr4 (322-354)||(52721202-52721234)
[»] chr1 (1 HSPs)
chr1 (256-313)||(43737787-43737844)
[»] chr2 (2 HSPs)
chr2 (254-294)||(9371014-9371054)
chr2 (256-312)||(14573319-14573374)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 10383021 - 10382813
Alignment:
Q  2 gtgggtagattattctgtgtgtgctctattattgtggaaaaggaaaagctatatggaatgtgggaatggtataggatgtttgatttgagaattttgcata 101  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||||    
T  10383021 gtgggtatattattatgtgtgtgcgctattattgtggaaaaggaaaagatatatggaatg--------gtataggatgtttgatttgagaattttgcata 10382930  T
Q  102 tgatggtgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaatt 201  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382929 tgatgttgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaatt 10382830  T
Q  202 cacaattctcatgctag 218  Q
    |||||||||||||||||    
T  10382829 cacaattctcatgctag 10382813  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 354
Target Start/End: Complemental strand, 10382775 - 10382643
Alignment:
Q  220 tataaagcatttccactgtggaaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnn 319  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| | | ||||||||||||| ||| |||| |||||||||||         
T  10382775 tataaagcatttctactatggaaaaatttaccttagtcattagatcaaatgaagaacacagttttatcgtacac-ttccaacattagattatttc-tttt 10382678  T
Q  320 nncaccttcaaccacccttctctctccttcctccc 354  Q
      |||||||||||||||||||||||||||||||||    
T  10382677 ttcaccttcaaccacccttctctctccttcctccc 10382643  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 9484308 - 9484419
Alignment:
Q  241 aaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttct 340  Q
    |||||||||| ||| |||||| ||||||||||||| | | ||||||| ||||||||| || |||||||||||||       |||||||||||||||||||    
T  9484308 aaaaatttactttaaccattaaattaaatgaagaacacagttttatcatacactttc-aatactagattatttc-tttttccaccttcaaccacccttct 9484405  T
Q  341 ctctccttcctccc 354  Q
    ||||||||||||||    
T  9484406 ctctccttcctccc 9484419  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 41639141 - 41639032
Alignment:
Q  242 aaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctc 341  Q
    ||||||||  |||||||||||||||| |  |||| | ||| |||| |||||||| ||||||||||||||||||       ||||||| ||||||||||||    
T  41639141 aaaatttattttagccattagattaatttgagaacacaatcttatggtacactt-ctaacactagattatttctttta--caccttccaccacccttctc 41639045  T
Q  342 tctccttcctccc 354  Q
    |||||||||||||    
T  41639044 tctccttcctccc 41639032  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 25075029 - 25074930
Alignment:
Q  252 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 351  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25075029 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25074933  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 25132998 - 25132899
Alignment:
Q  252 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 351  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25132998 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25132902  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 3136044 - 3136076
Alignment:
Q  322 caccttcaaccacccttctctctccttcctccc 354  Q
    ||||||| |||||||||||||||||||||||||    
T  3136044 caccttccaccacccttctctctccttcctccc 3136076  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 52721234 - 52721202
Alignment:
Q  322 caccttcaaccacccttctctctccttcctccc 354  Q
    |||||||||||||||||||||||||||||||||    
T  52721234 caccttcaaccacccttctctctccttcctccc 52721202  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 43737787 - 43737844
Alignment:
Q  256 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattattt 313  Q
    |||||||||||||||| ||||||| ||||||| ||| || || | |||||||||||||    
T  43737787 ccattagattaaatgaggaatatatttttatcatactctctcaaccactagattattt 43737844  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 9371014 - 9371054
Alignment:
Q  254 agccattagattaaatgaagaatataattttatcgtacact 294  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  9371014 agccattagattaaatgaagaacatacttttatcatacact 9371054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 14573319 - 14573374
Alignment:
Q  256 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattatt 312  Q
    |||||||||||||||| ||||||| ||||||| ||| || || ||||||||||||||    
T  14573319 ccattagattaaatgaggaatatatttttatcatactctctc-aacactagattatt 14573374  T

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