View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_6 (Length: 716)
Name: NF13254_low_6
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 43363780 - 43363399
Alignment:
| Q |
12 |
catcatcattcttgctaatccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctataaatccaacattga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
43363780 |
catcatcattcttgctaatccaaagtcaccaagcttagcattgaaatttgaatacaacataacattacttgattttatatccctatgaatccaacattga |
43363681 |
T |
|
| Q |
112 |
atgattaatatgaatattcgttacaaaaattaaatttaaatatttataaatctattcaaactaaaccgcataaaattgatatgatgatatttattcttag |
211 |
Q |
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| T |
43363680 |
atgattaatatgaatactcgttacaaaaattaaatttaaatatttataaatccattcaaactaaaccgcataaaattgatatgatgatatttattcttag |
43363581 |
T |
|
| Q |
212 |
aaatcatcaaatcaactaaaccgcgaatatttaaaaattttgatcgaatgacnnnnnnncatccaaatataattcagtaatgactggtttattttctatc |
311 |
Q |
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| T |
43363580 |
aagtcatcaaatcaactaaaccgcgaatatttaaaaattttgatcgaatgactttttttcatccaaatataattcagtaatgactggtttattttctatc |
43363481 |
T |
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| Q |
312 |
tgcaacacgattatgatttccacggcatgcttgtgaagccacaaccttctggctccatgaatctttatactcaatcttagat |
393 |
Q |
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| T |
43363480 |
tgcaacatgattatgatttccaccgcatgcttgtgaagccacaaccttctggctccatgaatctttatactcaatcttagat |
43363399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 386 - 616
Target Start/End: Complemental strand, 43362256 - 43362027
Alignment:
| Q |
386 |
tcttagattcagtgaaacaaaccatcaacttcaggggtaaaagtgcaaaaagcgtgggccccacgataattttatctctcgaatctttttctttctcata |
485 |
Q |
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| T |
43362256 |
tcttacattcagtgaaacaaaccatcaacttcagcggtaaaagtgcaaaaagcgtgggcctcacaataattttatctctcgcatctttttctttctcata |
43362157 |
T |
|
| Q |
486 |
tgtttccctcgttccaaacgcagcgttaaggaatnnnnnnnnnncacaaaaagggttttaggacacacactgtttggaactggttccttgttcctcttgc |
585 |
Q |
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| T |
43362156 |
tgtttccgtcgttccaaacgcagcgttaagtaa-gaaaaaaaaacacaaaaagggttttaggatacacactgtttggaactggttccttgttcctcttgc |
43362058 |
T |
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| Q |
586 |
tgctcaagctttgttgaaaccctaactctaa |
616 |
Q |
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| T |
43362057 |
tgctcaagctttgctgaaaccctaactctaa |
43362027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 617 - 701
Target Start/End: Complemental strand, 43362001 - 43361917
Alignment:
| Q |
617 |
aagttagattgtttattgaaagatggatgcgaaaaatggaagaaagcgcgatcaagttgaaaccctaaaggaaaatcacaagaac |
701 |
Q |
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| T |
43362001 |
aagttagattgttgattgaaagatggatgcgaaaaatggaagaaagcgcgaacaagttgaaaccctaaaggaaaatcacaagaac |
43361917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28264554 - 28264620
Alignment:
| Q |
31 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
97 |
Q |
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| T |
28264554 |
ccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttaatatccctat |
28264620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28279317 - 28279251
Alignment:
| Q |
31 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
97 |
Q |
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| T |
28279317 |
ccaaaatcaccaagcttgacattgaaactagaatctaacataacattacttgatttaatatccctat |
28279251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28289182 - 28289116
Alignment:
| Q |
31 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
97 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||| | ||||||||||| | |||| ||||| |||| |
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| T |
28289182 |
ccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttgatatctctat |
28289116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28294369 - 28294435
Alignment:
| Q |
31 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
97 |
Q |
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||||| ||||||||||| |||||||| |||| || ||||||||||||| | |||| |||||||||| |
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| T |
28294369 |
ccaaaatcaccaagcttgacattgaaacttgagtctaacataacattacttgatttaatatccctat |
28294435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28304571 - 28304637
Alignment:
| Q |
31 |
ccaaagtcaccaagcttagcattgaaatttgaatccaacataacattacctaattttatatccctat |
97 |
Q |
| |
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||||| |||||||||||| |||| ||| ||||||| | ||||||||||| | |||| |||||||||| |
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| T |
28304571 |
ccaaaatcaccaagcttaacattaaaacttgaatctagcataacattacttgatttaatatccctat |
28304637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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