View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_66 (Length: 357)

Name: NF13254_low_66
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_66
NF13254_low_66
[»] chr3 (10 HSPs)
chr3 (1-349)||(5248716-5249064)
chr3 (24-349)||(4390082-4390407)
chr3 (21-349)||(5266618-5266946)
chr3 (31-251)||(6723230-6723450)
chr3 (206-251)||(6140944-6140989)
chr3 (294-349)||(6915640-6915695)
chr3 (173-251)||(6850572-6850650)
chr3 (201-251)||(6915759-6915809)
chr3 (206-251)||(6257860-6257905)
chr3 (206-251)||(6264340-6264385)
[»] scaffold1643 (1 HSPs)
scaffold1643 (162-251)||(828-917)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 5249064 - 5248716
Alignment:
Q  1 tcaataacttgataattgaaagggaaatgactgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5249064 tcaataacttgataattgaaagggaaatgactgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactag 5248965  T
Q  101 ctttccaaactggcttcggggtagtcatttgttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgttt 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5248964 ctttccaaactggcttgggggtagtcatttgttcaatttagaatctctggatctggtaggatgtgaattttgttcccatttgccaccatttgagttgttt 5248865  T
Q  201 ccctatctcaagaagctttatatttcaggttgtcatggaatagagatcattaattcatcaaatgatccattcaagtttctcgaatatttgtattttgaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5248864 ccctatctcaagaagctttatatttcaggttgtcatggaatagagatcattaattcatcaaatgatccattcaagtttctcgaatttttgtattttgaga 5248765  T
Q  301 acatgtccaattggaagaaatggttatgtgttgagtgtttccctttgct 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5248764 acatgtccaattggaagaaatggttatgtgttgagtgtttccctttgct 5248716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 4390082 - 4390407
Alignment:
Q  24 gaaatgactgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggggta 123  Q
    |||||| ||||||||||||| ||| |||||||||| ||||||||||   |||||||| ||||||| || |||||||| |||||||| ||| |||||| |     
T  4390082 gaaatgtctgtcttggaggctcttcaaccaaatagcaaccttaataacttgaccatcgaacactaccgcggcactagttttccaaattggattcgggatt 4390181  T
Q  124 gtcatttgttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatat 223  Q
     |||||||| || ||||| ||||||  ||| |  ||||||| || |||||||||| || ||||||||||||  ||||||||||||||| || |||| |||    
T  4390182 ttcatttgtccagtttagtatctctaaatctgaaaggatgtcaactttgttcccagttgccaccatttgagaagtttccctatctcaataatctttgtat 4390281  T
Q  224 ttcaggttgtcatggaatagagatcattaattcatcaaatgatccattcaagtttctcgaatatttgtattttgagaacatgtccaattggaagaaatgg 323  Q
    |||| | |||| ||||||||||||||||||||||    ||| |||||||| ||| || |||  ||||   |||||| ||||||||||||||||| |||||    
T  4390282 ttcaagctgtcctggaatagagatcattaattcaattgatgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatgg 4390381  T
Q  324 ttatgtgttgagtgtttccctttgct 349  Q
    |||||||||||  |||||||||||||    
T  4390382 ttatgtgttgaaggtttccctttgct 4390407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 5266946 - 5266618
Alignment:
Q  21 agggaaatgactgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggg 120  Q
    ||||||||| ||||||||||||| ||| |||||||||| |||||||||| |||||||||| | ||||| | ||||||||| |||||||| |||||| |||    
T  5266946 agggaaatgtctgtcttggaggctcttcaaccaaatagcaaccttaataagctgaccatcgagcactacccaggcactagttttccaaattggcttgggg 5266847  T
Q  121 gtagtcatttgttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagcttta 220  Q
    || ||||||||| |||||||  ||||||  ||| |  ||||||| ||||||||||| | || |||| |||||  ||||||||| ||||||||| |||||     
T  5266846 gttgtcatttgtccaatttatcatctctcaatctgagaggatgtaaattttgttccaagttgccacaatttggcttgtttccccatctcaagatgctttc 5266747  T
Q  221 tatttcaggttgtcatggaatagagatcattaattcatcaaatgatccattcaagtttctcgaatatttgtattttgagaacatgtccaattggaagaaa 320  Q
    ||||||| | |||| | || | |||||||||||||||||||||  |||||||| || |||  ||   ||| ||||| |  ||||||| | ||||||| ||    
T  5266746 tatttcaagctgtcctagagtggagatcattaattcatcaaatagtccattcaggtctctgaaaacattgcatttttatgacatgtctagttggaaggaa 5266647  T
Q  321 tggttatgtgttgagtgtttccctttgct 349  Q
    ||||||||||||||  |||||||||||||    
T  5266646 tggttatgtgttgaaagtttccctttgct 5266618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 6723230 - 6723450
Alignment:
Q  31 ctgtcttggaggcccttgaaccaaatagtaaccttaatatgctgaccatcaaacactatcgaggcactagctttccaaactggcttcggggtagtcattt 130  Q
    ||||||||||||| ||| |||||||||  ||||| |  | ||| ||||||||| ||||| |||||| |||||||||||| ||| || ||  | |||||||    
T  6723230 ctgtcttggaggctcttcaaccaaataaaaacctcatgaggctcaccatcaaagactatggaggcagtagctttccaaattgggttgggtatcgtcattt 6723329  T
Q  131 gttcaatttagaatctctggatccggtaggatgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggt 230  Q
       |||||||| |||||| ||   | | |||||| |||| |||||||| || |||||| ||| |  ||| |||| |||| |||||||||  ||||||||     
T  6723330 acccaatttagtatctcttgaattgttgggatgtaaattctgttcccagttaccaccacttgggcagttcccctttctcgagaagctttccatttcaggc 6723429  T
Q  231 tgtcatggaatagagatcatt 251  Q
    ||| |||||||||||| ||||    
T  6723430 tgtgatggaatagagaccatt 6723450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 6140989 - 6140944
Alignment:
Q  206 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||    
T  6140989 tctcaagaagctttccatttcaggctgtcatggaatagagatcatt 6140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 6915695 - 6915640
Alignment:
Q  294 tttgagaacatgtccaattggaagaaatggttatgtgttgagtgtttccctttgct 349  Q
    |||||| |||||||| | |||||| ||||||||||| |||| ||||||||||||||    
T  6915695 tttgagcacatgtccgaatggaaggaatggttatgtcttgaatgtttccctttgct 6915640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 6850572 - 6850650
Alignment:
Q  173 ttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    |||||| |||||| || ||| | |||| |||| ||||||||| ||||  |||||||| ||| |||||||||||||||||    
T  6850572 ttcccagtttccatcacttgggctgttcccctctctcaagaatctttccatttcaggctgtgatggaatagagatcatt 6850650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 6915809 - 6915759
Alignment:
Q  201 ccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    |||| |||||||||||||| ||||||||| ||| |||||||||| ||||||    
T  6915809 ccctctctcaagaagctttttatttcaggctgtgatggaatagaaatcatt 6915759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 6257905 - 6257860
Alignment:
Q  206 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    ||||||||||||||  |||||||| |||||||||||| ||||||||    
T  6257905 tctcaagaagctttccatttcaggctgtcatggaataaagatcatt 6257860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 6264385 - 6264340
Alignment:
Q  206 tctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    ||||||||||||||  |||||||| ||||||||| |||||||||||    
T  6264385 tctcaagaagctttccatttcaggctgtcatggagtagagatcatt 6264340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 917 - 828
Alignment:
Q  162 tgtgaattttgttcccattttccaccatttgagttgtttccctatctcaagaagctttatatttcaggttgtcatggaatagagatcatt 251  Q
    |||| ||| |||||||||||||||||| ||| |  | |||| | ||||||||| |||| |||||||  |||| |||||||| ||||||||    
T  917 tgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttctatttcatattgtgatggaataaagatcatt 828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University