View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_69 (Length: 339)
Name: NF13254_low_69
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_69 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 3267925 - 3268250
Alignment:
| Q |
14 |
agaccactaatctctcactacatgcagtgatatcaggaatttgtccttcaaacccattataggatatattgaaatatgtaagattttgcagtcctaggat |
113 |
Q |
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| T |
3267925 |
agaccactaatctctcactacatgcagtgatatcaggaatttgtccttcaaacccattataggatatattgaaatatgtaagattttgcagtcctaggat |
3268024 |
T |
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| Q |
114 |
gctgaatggagccaaatcagtaaatctattactaccaaaatccaaatgcattagactatggcatccagaaatgtgctcttccacactacctgataaggca |
213 |
Q |
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| T |
3268025 |
gctgaatggagcgaaatcagtaaatctattactaccaaaatccaaatgcattagactatggcatccagaaatgtgctcttccacactacctgataaggca |
3268124 |
T |
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| Q |
214 |
ttgcttctcagtgatacataagataacataggaatgtcacatagtctagaagggacaacaccgctaagattattgaaagaaaaatcaaaaccttcaaggt |
313 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3268125 |
ttgcttctaagtgatacataagataacataggaatgtcacatagtctagaagggacaacaccgctaagattattgaaagaaaaatcaaaaccttcaaggt |
3268224 |
T |
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| Q |
314 |
tagggcaattcaccaaagacacagga |
339 |
Q |
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||| |||||||||||||||||||||| |
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| T |
3268225 |
tagagcaattcaccaaagacacagga |
3268250 |
T |
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