View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_74 (Length: 333)

Name: NF13254_low_74
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_low_74
NF13254_low_74
[»] chr1 (26 HSPs)
chr1 (216-318)||(5180103-5180205)
chr1 (107-217)||(5180228-5180329)
chr1 (39-106)||(46282071-46282138)
chr1 (39-108)||(49093039-49093108)
chr1 (39-101)||(46282826-46282888)
chr1 (39-101)||(50062981-50063043)
chr1 (39-110)||(32622389-32622460)
chr1 (41-107)||(13295615-13295681)
chr1 (39-101)||(32619389-32619451)
chr1 (39-107)||(13295134-13295202)
chr1 (39-103)||(25065991-25066055)
chr1 (39-106)||(51935232-51935299)
chr1 (39-108)||(25064931-25065000)
chr1 (39-107)||(1047521-1047589)
chr1 (35-107)||(12577009-12577081)
chr1 (7-47)||(46282159-46282199)
chr1 (7-47)||(46282765-46282805)
chr1 (7-47)||(49093129-49093169)
chr1 (7-47)||(49093785-49093825)
chr1 (7-47)||(50062291-50062331)
chr1 (7-47)||(50062920-50062960)
chr1 (39-108)||(46364572-46364641)
chr1 (39-107)||(2828192-2828260)
chr1 (39-107)||(24701586-24701654)
chr1 (39-107)||(32238698-32238766)
chr1 (39-71)||(49093846-49093878)
[»] chr8 (29 HSPs)
chr8 (39-111)||(34665765-34665837)
chr8 (39-107)||(34213763-34213831)
chr8 (39-101)||(34666573-34666635)
chr8 (39-107)||(34214561-34214630)
chr8 (50-111)||(1232841-1232902)
chr8 (39-107)||(33497649-33497717)
chr8 (39-107)||(38598963-38599031)
chr8 (39-110)||(25288109-25288180)
chr8 (39-110)||(1231522-1231593)
chr8 (39-92)||(7393178-7393231)
chr8 (39-107)||(4463459-4463527)
chr8 (7-47)||(34214500-34214540)
chr8 (39-107)||(36623351-36623419)
chr8 (39-106)||(27437552-27437619)
chr8 (39-107)||(25287791-25287859)
chr8 (36-108)||(27857056-27857128)
chr8 (7-47)||(34665858-34665898)
chr8 (7-47)||(34666513-34666553)
chr8 (40-108)||(43866709-43866777)
chr8 (39-106)||(27436563-27436630)
chr8 (39-102)||(33497020-33497083)
chr8 (40-107)||(36623671-36623738)
chr8 (38-105)||(37342976-37343043)
chr8 (38-105)||(40525630-40525697)
chr8 (38-105)||(43866834-43866901)
chr8 (36-106)||(23424826-23424896)
chr8 (39-101)||(36576034-36576096)
chr8 (39-108)||(40422477-40422546)
chr8 (35-107)||(41182209-41182281)
[»] chr6 (19 HSPs)
chr6 (39-107)||(4116798-4116866)
chr6 (39-107)||(4117580-4117648)
chr6 (39-106)||(33399966-33400033)
chr6 (39-108)||(33401159-33401228)
chr6 (39-103)||(1661463-1661527)
chr6 (39-107)||(14657242-14657310)
chr6 (39-107)||(14656479-14656547)
chr6 (39-107)||(17784418-17784486)
chr6 (39-110)||(13480204-13480275)
chr6 (39-92)||(8427398-8427451)
chr6 (39-108)||(30234909-30234978)
chr6 (7-47)||(1661402-1661442)
chr6 (7-47)||(14657181-14657221)
chr6 (7-47)||(33400054-33400094)
chr6 (39-105)||(23291745-23291811)
chr6 (39-108)||(5064333-5064402)
chr6 (40-105)||(13480333-13480398)
chr6 (39-108)||(13480525-13480594)
chr6 (39-107)||(15819807-15819875)
[»] chr3 (37 HSPs)
chr3 (39-110)||(2944699-2944770)
chr3 (39-110)||(22736723-22736794)
chr3 (39-106)||(45279317-45279384)
chr3 (39-101)||(48188383-48188445)
chr3 (39-107)||(1757337-1757405)
chr3 (39-107)||(48189132-48189200)
chr3 (39-106)||(11026665-11026732)
chr3 (39-106)||(43105233-43105300)
chr3 (39-101)||(43105867-43105929)
chr3 (39-107)||(29193026-29193094)
chr3 (39-106)||(1756550-1756617)
chr3 (39-101)||(44476054-44476116)
chr3 (39-101)||(45278549-45278611)
chr3 (39-110)||(32717138-32717209)
chr3 (39-101)||(37249204-37249266)
chr3 (39-111)||(2943908-2943980)
chr3 (39-107)||(29192034-29192102)
chr3 (39-110)||(44481986-44482057)
chr3 (39-101)||(37249831-37249892)
chr3 (39-84)||(11025959-11026004)
chr3 (7-47)||(2944638-2944678)
chr3 (7-47)||(1756638-1756678)
chr3 (7-47)||(37249770-37249810)
chr3 (7-47)||(45278632-45278672)
chr3 (7-47)||(45279256-45279296)
chr3 (7-47)||(48188466-48188506)
chr3 (7-47)||(48189071-48189111)
chr3 (39-110)||(1741383-1741454)
chr3 (16-47)||(11026025-11026056)
chr3 (38-105)||(21300327-21300394)
chr3 (38-105)||(22129129-22129196)
chr3 (39-106)||(53037027-53037094)
chr3 (17-47)||(11026614-11026644)
chr3 (17-47)||(43105816-43105846)
chr3 (39-108)||(10749316-10749385)
chr3 (19-47)||(37249287-37249315)
chr3 (35-107)||(40257186-40257258)
[»] chr5 (35 HSPs)
chr5 (39-108)||(20856930-20856999)
chr5 (39-108)||(20072902-20072971)
chr5 (39-107)||(39181056-39181124)
chr5 (39-106)||(20072121-20072188)
chr5 (39-106)||(39181829-39181896)
chr5 (39-109)||(8654104-8654174)
chr5 (39-113)||(22870495-22870569)
chr5 (39-110)||(20857580-20857651)
chr5 (39-101)||(16532898-16532960)
chr5 (39-101)||(36476770-36476832)
chr5 (39-107)||(31107930-31107998)
chr5 (39-106)||(16533658-16533725)
chr5 (39-101)||(21978050-21978112)
chr5 (39-101)||(36477409-36477471)
chr5 (39-92)||(22869619-22869672)
chr5 (39-107)||(14744763-14744831)
chr5 (54-101)||(21972095-21972142)
chr5 (39-108)||(21979004-21979073)
chr5 (39-108)||(32052222-32052291)
chr5 (39-110)||(33735309-33735380)
chr5 (36-108)||(7015506-7015578)
chr5 (7-47)||(16532981-16533021)
chr5 (7-47)||(16533597-16533637)
chr5 (7-47)||(20072841-20072881)
chr5 (7-47)||(39181145-39181185)
chr5 (7-47)||(39181768-39181808)
chr5 (16-47)||(20072209-20072240)
chr5 (39-110)||(31108371-31108441)
chr5 (16-47)||(36476853-36476884)
chr5 (39-108)||(14745446-14745515)
chr5 (39-108)||(25253403-25253472)
chr5 (39-108)||(25317194-25317263)
chr5 (39-107)||(32052541-32052609)
chr5 (19-47)||(36477360-36477388)
chr5 (60-108)||(39402736-39402784)
[»] chr2 (18 HSPs)
chr2 (39-107)||(20982523-20982591)
chr2 (39-107)||(29957816-29957884)
chr2 (39-110)||(20101766-20101837)
chr2 (39-106)||(29958580-29958647)
chr2 (39-106)||(20983294-20983361)
chr2 (39-112)||(25624466-25624539)
chr2 (39-107)||(20103177-20103245)
chr2 (39-106)||(25623288-25623355)
chr2 (39-109)||(24387348-24387418)
chr2 (39-108)||(24388289-24388358)
chr2 (39-104)||(21103088-21103148)
chr2 (39-107)||(16366962-16367030)
chr2 (7-47)||(20983233-20983273)
chr2 (39-106)||(10446832-10446899)
chr2 (16-47)||(29957905-29957936)
chr2 (39-110)||(43236500-43236571)
chr2 (36-106)||(20911443-20911513)
chr2 (66-106)||(21370590-21370630)
[»] chr4 (27 HSPs)
chr4 (39-106)||(38813554-38813621)
chr4 (39-107)||(52815662-52815730)
chr4 (39-107)||(52816456-52816524)
chr4 (39-107)||(56556581-56556649)
chr4 (37-107)||(23454953-23455023)
chr4 (39-107)||(38814360-38814428)
chr4 (39-110)||(56557358-56557429)
chr4 (39-101)||(38982629-38982691)
chr4 (39-107)||(23455722-23455790)
chr4 (39-111)||(53477113-53477185)
chr4 (39-107)||(55013122-55013189)
chr4 (41-106)||(54591613-54591678)
chr4 (39-110)||(13336871-13336942)
chr4 (40-110)||(22250051-22250121)
chr4 (7-47)||(38814299-38814339)
chr4 (7-47)||(52816395-52816435)
chr4 (39-107)||(53559704-53559772)
chr4 (7-47)||(56556670-56556710)
chr4 (7-47)||(56557297-56557337)
chr4 (38-105)||(22249927-22249994)
chr4 (40-103)||(54590146-54590209)
chr4 (39-108)||(33294460-33294529)
chr4 (39-107)||(8287250-8287318)
chr4 (39-107)||(9254405-9254473)
chr4 (7-47)||(38813642-38813682)
chr4 (19-47)||(38982580-38982608)
chr4 (7-47)||(52815751-52815791)
[»] chr7 (25 HSPs)
chr7 (39-107)||(27480780-27480848)
chr7 (39-107)||(37284108-37284176)
chr7 (39-107)||(37289343-37289411)
chr7 (39-106)||(27479987-27480054)
chr7 (39-101)||(22661362-22661424)
chr7 (39-108)||(4227205-4227274)
chr7 (39-108)||(38643548-38643617)
chr7 (39-107)||(12643099-12643167)
chr7 (39-111)||(12930767-12930839)
chr7 (39-107)||(45915841-45915909)
chr7 (39-110)||(45914522-45914593)
chr7 (39-111)||(12929282-12929354)
chr7 (39-110)||(4226121-4226192)
chr7 (39-110)||(12644166-12644237)
chr7 (39-108)||(7158229-7158298)
chr7 (39-107)||(37563671-37563739)
chr7 (39-107)||(47558029-47558097)
chr7 (36-107)||(26825629-26825700)
chr7 (39-110)||(43937890-43937961)
chr7 (38-106)||(15827914-15827982)
chr7 (7-47)||(22661445-22661485)
chr7 (7-47)||(27480719-27480759)
chr7 (16-47)||(27480075-27480106)
chr7 (39-110)||(37563350-37563421)
chr7 (66-112)||(20426718-20426764)
[»] scaffold0182 (2 HSPs)
scaffold0182 (39-108)||(14410-14479)
scaffold0182 (50-107)||(13133-13190)
[»] scaffold0009 (2 HSPs)
scaffold0009 (39-107)||(262474-262542)
scaffold0009 (39-112)||(260995-261068)
[»] scaffold0347 (2 HSPs)
scaffold0347 (39-106)||(13609-13676)
scaffold0347 (39-104)||(14626-14691)
[»] scaffold0018 (1 HSPs)
scaffold0018 (39-106)||(73109-73176)
[»] scaffold1493 (2 HSPs)
scaffold1493 (39-110)||(589-660)
scaffold1493 (39-107)||(910-978)
[»] scaffold0321 (1 HSPs)
scaffold0321 (39-112)||(10979-11052)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 5180205 - 5180103
Alignment:
Q  216 ttcgcaacttcatcttctttgtttatgttttttcttttcttcattacctgcaaaaacaatcatatttttgtgttatgaaaagaagtttatcatgattatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180205 ttcgcaacttcatcttctttgtttatgttttttcttttcttcatcacctgcaaaaacaatcatatttttgtgttatgaaaagaagtttatcatgattatt 5180106  T
Q  316 att 318  Q
    |||    
T  5180105 att 5180103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 5180329 - 5180228
Alignment:
Q  107 taaatatttatcttcttcctctttcacaatgttcatgagcatgacctttataaatgtcaagggttttgttgttccccccatacaaagaacaaagacactc 206  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180329 taaatatttatcttcttcctctttcacaatgttcatg---------tttataaatgtcaagggttttgttgttccccccatacaaagaacaaagacactc 5180239  T
Q  207 taaagaagatt 217  Q
    |||||||||||    
T  5180238 taaagaagatt 5180228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 46282138 - 46282071
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46282138 gattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaaacatatttaagcc 46282071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 49093108 - 49093039
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  49093108 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatgtttaagccta 49093039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 46282826 - 46282888
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46282826 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 46282888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 50062981 - 50063043
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50062981 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 50063043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 32622389 - 32622460
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||    
T  32622389 gattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaaacatattttaccctaaa 32622460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 13295615 - 13295681
Alignment:
Q  41 ttagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  13295615 ttagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 13295681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 32619451 - 32619389
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  32619451 gattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 32619389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 13295202 - 13295134
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||| |||||||||||| | ||||||||||||||| |||||  |||||||||||||    
T  13295202 gattagtaagctcaggggtgaaaaatcaaatgacctataattacaggggtgaaatgcatatttaagcct 13295134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 25065991 - 25066055
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaa 103  Q
    |||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||  |||||||||    
T  25065991 gattagtaagctcagggatgaaaaatcaaatggcttataattatagggatgaaatgcatatttaa 25066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 51935232 - 51935299
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||| ||| ||||||||||||||||||| | | |||||||||| ||||||||| ||||||||||||    
T  51935232 gattagaaagctcagggatgaaaaatcaaatgacatataattacatggatgaaaagcatatttaagcc 51935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 25065000 - 25064931
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| |||||||||||||||||||   ||||||||| |||||||||||  ||||||||| ||||    
T  25065000 gattagtaagatcagggatgaaaaatcaaattacctataattgcagggatgaaatgcatatttaatccta 25064931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 1047521 - 1047589
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  |||| || ||||| ||||| | |||||| |||||||||||||| ||||||||||||||    
T  1047521 gattagtaacttcagagacgaaaattcaaatgacctatatttacagggatgaaagacatatttaagcct 1047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 12577081 - 12577009
Alignment:
Q  35 aaatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||||||  |||  || ||||| ||||| |||||||| ||||||||| |||| ||||||||||||||    
T  12577081 aaatgattagtaacttcatagacgaaaattcaaatggcctatatttacagggacgaaagacatatttaagcct 12577009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 46282199 - 46282159
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  46282199 gattatccgggaagagggacgaactttcaaatgattagtaa 46282159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46282765 - 46282805
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  46282765 gattatccgggaagagggacgaactttcaaatgattagtaa 46282805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 49093169 - 49093129
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  49093169 gattatccgggaagagggacgaactttcaaatgattagtaa 49093129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 49093785 - 49093825
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  49093785 gattatccgggaagagggacgaactttcaaatgattagtaa 49093825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 50062331 - 50062291
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  50062331 gattatccgggaagagggacgaactttcaaatgattagtaa 50062291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 50062920 - 50062960
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  50062920 gattatccgggaagagggacgaactttcaaatgattagtaa 50062960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 46364641 - 46364572
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| |||||||||||||||    
T  46364641 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagccta 46364572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 2828260 - 2828192
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| | | ||||||||||||||| |  |||||||| || ||||||||  |||||||||||||    
T  2828260 gattagtaagtttatggatgaaaaatcaaatgatctataattgcaaggatgaaatgcatatttaagcct 2828192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 24701586 - 24701654
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| ||| |||| || ||||||||||| || |||||||||||    
T  24701586 gattagtaacttcagggacgaaaattcaaatggcttatatttgcagggatgaaagacctatttaagcct 24701654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 32238766 - 32238698
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||  |||||  ||||||| || |||||||||||  ||||||| |||||    
T  32238766 gattagtaagttcagggatgaaatttcaaatagcctatatttgcagggatgaaatgcatattttagcct 32238698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 49093846 - 49093878
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacgg 71  Q
    |||||||||| ||||||||||||||||||||||    
T  49093846 gattagtaagttcagggatgaaaaatcaaacgg 49093878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 34665837 - 34665765
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaat 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34665837 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcctaaat 34665765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 34213831 - 34213763
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  34213831 gattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagcct 34213763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 34666573 - 34666635
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34666573 gattagtaagttcagggatgaaaaatcaaacggcctataattacagcgatgaaaaacatattt 34666635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 34214561 - 34214630
Alignment:
Q  39 gattagtaaggtcagggat-gaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34214561 gattagtaagttcagggattgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 34214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 1232841 - 1232902
Alignment:
Q  50 tcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaat 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  1232841 tcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcctaaat 1232902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 33497649 - 33497717
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||    
T  33497649 gattagtaagctcatggatgaaaaatcaaatgccctataattacagggatgaaaagcatatttaagcct 33497717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 38599031 - 38598963
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||    
T  38599031 gattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 38598963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 25288109 - 25288180
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| | ||||||||| ||| |||||||  ||||||||||||||||    
T  25288109 gattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagcctaaa 25288180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 1231593 - 1231522
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||| ||||||||||||||| |||||||||||  ||||||||||  ||||||||||| ||||    
T  1231593 gattagtaagctcatggatgaaaaatcaaagggcctataattgtagggatgaaatgcatatttaagcttaaa 1231522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 7393178 - 7393231
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaa 92  Q
    |||||||||| ||||||||||||||||||| | ||||||||| |||||||||||    
T  7393178 gattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaa 7393231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4463459 - 4463527
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||  ||||| |||||||| || |||||||||||  |||||||||||||    
T  4463459 gattagtaagttcagggatgaaatttcaaatggcctatacttgcagggatgaaatgcatatttaagcct 4463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 34214500 - 34214540
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  34214500 gattattcgggaagagggacgaactttcaaatgattagtaa 34214540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 36623419 - 36623351
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||||||||||||||||||    
T  36623419 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaaaacatatttaagcct 36623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 27437552 - 27437619
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||  ||||||| ||||| |||||||||||||| || |||||||||||  ||||||||||||    
T  27437552 gattagtaacttcagggacgaaaattcaaacggcctatatttgcagggatgaaatgcatatttaagcc 27437619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 25287859 - 25287791
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||| ||| ||||||||| |||| ||||||||||||||    
T  25287859 gattagtaacttcagggacgaaaattcaaatggccaatatttacagggacgaaagacatatttaagcct 25287791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 27857056 - 27857128
Alignment:
Q  36 aatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    ||||||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||| ||||    
T  27857056 aatgattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaaaccta 27857128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 34665898 - 34665858
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  34665898 gattatccgggaagagggacgaactttcaaatgattagtaa 34665858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 34666513 - 34666553
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  34666513 gattatccgggaagagggacgaactttcaaatgattagtaa 34666553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 43866777 - 43866709
Alignment:
Q  40 attagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    ||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||||||||    
T  43866777 attagtaatttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagccta 43866709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 27436630 - 27436563
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||  ||||||| ||||| ||||||| |||||| || |||||||||||  ||||||||||||    
T  27436630 gattagtaacttcagggacgaaaattcaaacgacctatatttgcagggatgaaatgcatatttaagcc 27436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 33497083 - 33497020
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattta 102  Q
    |||||||||| ||| | ||||||||||||| | |||||||||||| | ||||||| ||||||||    
T  33497083 gattagtaagttcaagaatgaaaaatcaaatgacctataattacatgaatgaaaatcatattta 33497020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 36623671 - 36623738
Alignment:
Q  40 attagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    ||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| ||||||||||||||    
T  36623671 attagtaatttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcct 36623738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 37343043 - 37342976
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||||||||| ||||| | |||||| || ||||||||||| || |||||||||    
T  37343043 tgattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacctatttaagc 37342976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 40525630 - 40525697
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||| ||||| ||||| | |||||| |||||||||||||| || |||||||||    
T  40525630 tgattagtaacttcagggacgaaaattcaaatgacctatatttacagggatgaaagacctatttaagc 40525697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 43866834 - 43866901
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||||||||| ||||| | |||||| || ||||||||||| || |||||||||    
T  43866834 tgattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacttatttaagc 43866901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 23424826 - 23424896
Alignment:
Q  36 aatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    ||||||||||||  ||||||| ||||| ||||| |||||||| || |||| | |||| |||||||||||||    
T  23424826 aatgattagtaacttcagggacgaaaattcaaatggcctatatttgcaggaacgaaagacatatttaagcc 23424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 36576034 - 36576096
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||| ||||| ||||||||||||  ||||| ||| |||| |||||||||||||| ||||||||    
T  36576034 gattggtaagttcagggatgaaatttcaaatggcttatatttacagggatgaaatacatattt 36576096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 40422477 - 40422546
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || ||||||||||| || ||||||||||||    
T  40422477 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggatgaaagacctatttaagccta 40422546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 41182209 - 41182281
Alignment:
Q  35 aaatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||||||  ||||||| ||||| ||||| | | |||| || |||||| |||| ||||||||||||||    
T  41182209 aaatgattagtaacttcagggacgaaaattcaaatgacatatatttgcagggacgaaagacatatttaagcct 41182281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 4116866 - 4116798
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4116866 gattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4116798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 4117580 - 4117648
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117580 gattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 4117648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 33400033 - 33399966
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33400033 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 33399966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 33401159 - 33401228
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  33401159 gattagtaagttcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagccta 33401228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 1661463 - 1661527
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaa 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1661463 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaa 1661527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 14657242 - 14657310
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  14657242 gattagtaaggtcagggataaaaaatcaaacggcctataattatagggatgaaaagcatatttaagcct 14657310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 14656547 - 14656479
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  14656547 gattagtaagctcagggatgaaaaatcaaacagcctataattgcagggatgaaaagcatatttaagcct 14656479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 17784418 - 17784486
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||| ||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||    
T  17784418 gattagtaagttcatggatgaaaaatcaaatggcctatcattgcagggatgaaaagcatatttaagcct 17784486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 13480275 - 13480204
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||||||||||    
T  13480275 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcctaaa 13480204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 8427398 - 8427451
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaa 92  Q
    ||||||||||  |||||||||||||||||| | ||||||||| |||||||||||    
T  8427398 gattagtaagtccagggatgaaaaatcaaatgacctataattgcagggatgaaa 8427451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 30234909 - 30234978
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||||||||| ||||||  |||||| || |||||| |||| |||||||||||||||    
T  30234909 gattagtaacttcagggatgaaaattcaaacaacctatatttgcagggacgaaagacatatttaagccta 30234978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 1661402 - 1661442
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  1661402 gattatccgggaagagggacgaactttcaaatgattagtaa 1661442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 14657181 - 14657221
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  14657181 gattatccgggaagagggacgaactttcaaatgattagtaa 14657221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 33400094 - 33400054
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  33400094 gattatccgggaagagggacgaactttcaaatgattagtaa 33400054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 23291811 - 23291745
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    |||||||||  ||||||||||||| ||||| |||||||| ||  ||||| |||| ||||||||||||    
T  23291811 gattagtaacttcagggatgaaaattcaaatggcctatatttgtagggacgaaagacatatttaagc 23291745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 5064402 - 5064333
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | | |||| ||||||||| |||| |||||||||||||||    
T  5064402 gattagtaacttcagggacgaaaattcaaatgacttatatttacagggacgaaagacatatttaagccta 5064333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 13480333 - 13480398
Alignment:
Q  40 attagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||  ||||||| ||||| ||||| | |||||| || |||||||||||||| |||||||||    
T  13480333 attagtaacttcagggacgaaaattcaaatgacctatatttgcagggatgaaaaacctatttaagc 13480398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 13480525 - 13480594
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| ||||| ||| |||| |||||||||||||||    
T  13480525 gattagtaacttcagggacgaaaattcaaatgacctatatttacaaggacgaaagacatatttaagccta 13480594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 15819807 - 15819875
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| ||||||||||||||    
T  15819807 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcct 15819875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 2944699 - 2944770
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2944699 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcctaaa 2944770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 22736723 - 22736794
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  22736723 gattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagcctaaa 22736794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 45279317 - 45279384
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45279317 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 45279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 48188445 - 48188383
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48188445 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 48188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 1757337 - 1757405
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1757337 gattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 1757405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 48189132 - 48189200
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  48189132 gattagtaagctcagggatgaaaaatcaaacggcctataattacaaggatgaaaagcatatttaagcct 48189200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 11026665 - 11026732
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11026665 gattggtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 11026732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 43105300 - 43105233
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  43105300 gattagtaagttcagggatgaaaaatcaaacggcctataattacaaggatgtaaaacatatttaagcc 43105233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 43105867 - 43105929
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43105867 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaaacgtattt 43105929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 29193026 - 29193094
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  29193026 gattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 29193094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 1756617 - 1756550
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1756617 gattagtaagttcatggatgaaaaatcaaacggcctataattacaaggatgaaaaatatatttaagcc 1756550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 44476116 - 44476054
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  44476116 gattagtaagttcagggatgaaaaatcaaatggcccataattacagggatgaaaaacatattt 44476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 45278611 - 45278549
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45278611 gattagtaaattcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 45278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 32717138 - 32717209
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| | ||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||    
T  32717138 gattagtaagtttagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcctaaa 32717209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 37249266 - 37249204
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  37249266 gattaataagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 37249204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 2943980 - 2943908
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggat-gaaaaacatatttaagcctaaat 111  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  2943980 gattagtaagctcagg-atgaaaaatcaaacggcctataattgcagggatagaaaagcatatttaagcctaaat 2943908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 29192102 - 29192034
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||  ||||||| |||||    
T  29192102 gattagtaagctcaggaatgaaaaatcaaatggcctataattacagggatgaaatgcatatttcagcct 29192034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 44481986 - 44482057
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||| ||||||| | ||||||    
T  44481986 gattagtaagctcatggatgaaaaatcaaatggcccataattacagggatgaaaagcatattttaccctaaa 44482057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 37249831 - 37249892
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  37249831 gattagtaagctcagggatgaaaaatcaaacggcctataattgca-ggatgaaaagcatattt 37249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 11026004 - 11025959
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacag 84  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||    
T  11026004 gattagtaagttcagggatgaaaaatcaaacggcttataattacag 11025959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 2944638 - 2944678
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  2944638 gattattcgggaagagggacgaactttcaaatgattagtaa 2944678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1756678 - 1756638
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  1756678 gattatccgggaagagggacgaactttcaaatgattagtaa 1756638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 37249770 - 37249810
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  37249770 gattatccgggaagagggacgaactttcaaatgattagtaa 37249810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 45278672 - 45278632
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  45278672 gattatccgggaagagggacgaactttcaaatgattagtaa 45278632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 45279256 - 45279296
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  45279256 gattatccgggaagagggacgaactttcaaatgattagtaa 45279296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 48188506 - 48188466
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  48188506 gattatccgggaagagggacgaactttcaaatgattagtaa 48188466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 48189071 - 48189111
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  48189071 gattatccgggaagagggacgaactttcaaatgattagtaa 48189111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 1741454 - 1741383
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| |||||||||||||||||    
T  1741454 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcctaaa 1741383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 11026056 - 11026025
Alignment:
Q  16 ggaagagggacgaactttcaaatgattagtaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  11026056 ggaagagggacgaactttcaaatgattagtaa 11026025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 21300394 - 21300327
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||||||||| ||||| | |||||| || ||||||||||| || |||||||||    
T  21300394 tgattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacctatttaagc 21300327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 22129129 - 22129196
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||| ||||| ||||| | |||||| |||||||||||||| || |||||||||    
T  22129129 tgattagtaacttcagggacgaaaattcaaatgacctatatttacagggatgaaagacttatttaagc 22129196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 53037094 - 53037027
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||  ||||||| ||||| ||||| | |||||| |||||||||||||| || ||||||||||    
T  53037094 gattagtaacttcagggacgaaaattcaaatgacctatatttacagggatgaaagacttatttaagcc 53037027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 11026614 - 11026644
Alignment:
Q  17 gaagagggacgaactttcaaatgattagtaa 47  Q
    |||||||||||||||||||||||||||||||    
T  11026614 gaagagggacgaactttcaaatgattagtaa 11026644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 43105816 - 43105846
Alignment:
Q  17 gaagagggacgaactttcaaatgattagtaa 47  Q
    |||||||||||||||||||||||||||||||    
T  43105816 gaagagggacgaactttcaaatgattagtaa 43105846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 10749385 - 10749316
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| ||||||||| |||| || ||||||||||||    
T  10749385 gattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaagacctatttaagccta 10749316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 37249315 - 37249287
Alignment:
Q  19 agagggacgaactttcaaatgattagtaa 47  Q
    |||||||||||||||||||||||||||||    
T  37249315 agagggacgaactttcaaatgattagtaa 37249287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 40257186 - 40257258
Alignment:
Q  35 aaatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||||||  ||||||| ||||| |||||   | |||| ||| ||||| |||||||||||||||||||    
T  40257186 aaatgattagtaatttcagggacgaaaattcaaataacttatatttatagggacgaaaaacatatttaagcct 40257258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 20856999 - 20856930
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20856999 gattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagccta 20856930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 20072902 - 20072971
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  20072902 gattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaagcatatttaagccta 20072971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 39181124 - 39181056
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  39181124 gattagtaagttcagggatgaaaaatcaaacggcttataattacagggatgaaaagcatatttaagcct 39181056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 20072188 - 20072121
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  20072188 gattagtaagttcagggatgaaaaatcaaacggcctataattacagagatgaaaagcatatttaagcc 20072121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 39181829 - 39181896
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  39181829 gattagtaagttcagggatgaaaaatcaaacgacctataattacagggattaaaaacatatttaagcc 39181896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 8654174 - 8654104
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaa 109  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  8654174 gattagtaagctcatggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagcctaa 8654104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 22870495 - 22870569
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaatat 113  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||||    
T  22870495 gattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcctatatat 22870569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 20857580 - 20857651
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| | ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  20857580 gattagtaagcttaggaatgaaaaatcaaacggcctataattacatggatgaaaagcatatttaagcctaaa 20857651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 16532960 - 16532898
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16532960 gattaataagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 16532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 36476832 - 36476770
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  36476832 gattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 36476770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 31107998 - 31107930
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||    
T  31107998 gattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcct 31107930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 16533658 - 16533725
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    ||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  16533658 gattaataagttcagagatgaaaaatcaaacggcctataattatagggatgaaaagcatatttaagcc 16533725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 21978050 - 21978112
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  21978050 gattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 21978112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 36477409 - 36477471
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  36477409 gattagtaagctcatggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 36477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 22869672 - 22869619
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaa 92  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  22869672 gattagtaagctcagggatgaaaaatcaaatggcctataattacaaggatgaaa 22869619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 14744763 - 14744831
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| | | ||||||| |||||||||||  |||||||||||||    
T  14744763 gattagtaagttcagggatgaaaaatcaaatgacatataattgcagggatgaaatgcatatttaagcct 14744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 21972142 - 21972095
Alignment:
Q  54 ggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  21972142 ggatgaaaaatcaaatggcccataattacagggatgaaaaacatattt 21972095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 21979004 - 21979073
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||  ||||||||||||||| ||| ||||||| |||||||||||  ||||||||||||||    
T  21979004 gattagtaagttcgaggatgaaaaatcaaatggcttataattgcagggatgaaatgcatatttaagccta 21979073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 32052291 - 32052222
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| ||||||||| ||||||||||||||||||||    
T  32052291 gattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaaaacatatttaagccta 32052222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 33735380 - 33735309
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||  ||||||| ||||||||||| |||||||| ||  ||||| |||| |||||||||||||||||    
T  33735380 gattagtaatttcagggacgaaaaatcaaatggcctatatttgtagggacgaaagacatatttaagcctaaa 33735309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 7015578 - 7015506
Alignment:
Q  36 aatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    ||||||||||||  ||| ||||||||| ||||| |||||||| || |||||| |||| || ||||||||||||    
T  7015578 aatgattagtaacttcatggatgaaaattcaaatggcctatatttgcagggacgaaagacctatttaagccta 7015506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 16533021 - 16532981
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  16533021 gattatccgggaagagggacgaactttcaaatgattagtaa 16532981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 16533597 - 16533637
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  16533597 gattatccgggaagagggacgaactttcaaatgattagtaa 16533637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20072841 - 20072881
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  20072841 gattatccgggaagagggacgaactttcaaatgattagtaa 20072881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 39181185 - 39181145
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  39181185 gattatccgggaagagggacgaactttcaaatgattagtaa 39181145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 39181768 - 39181808
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  39181768 gattatccgggaagagggacgaactttcaaatgattagtaa 39181808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 20072240 - 20072209
Alignment:
Q  16 ggaagagggacgaactttcaaatgattagtaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  20072240 ggaagagggacgaactttcaaatgattagtaa 20072209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 31108371 - 31108441
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||| |||||||||||||||  | ||||| || ||||||||||| |||||||||| ||||||    
T  31108371 gattagtaagttcatggatgaaaaatcaaa-tgtctatatttgcagggatgaaatacatatttaaacctaaa 31108441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 36476884 - 36476853
Alignment:
Q  16 ggaagagggacgaactttcaaatgattagtaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  36476884 ggaagagggacgaactttcaaatgattagtaa 36476853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 14745515 - 14745446
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||||||||| ||||| | |||||| || |||||| |||| || ||||||||||||    
T  14745515 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggacgaaagacctatttaagccta 14745446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 25253403 - 25253472
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| |||||||||||||||    
T  25253403 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagccta 25253472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 25317194 - 25317263
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| |||||||||||||||    
T  25317194 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagccta 25317263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 32052541 - 32052609
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| | |||||| || |||||| |||| ||||||||||||||    
T  32052541 gattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcct 32052609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 36477360 - 36477388
Alignment:
Q  19 agagggacgaactttcaaatgattagtaa 47  Q
    |||||||||||||||||||||||||||||    
T  36477360 agagggacgaactttcaaatgattagtaa 36477388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 39402736 - 39402784
Alignment:
Q  60 aaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    ||||||||| | ||||||||| || ||||||||||||||||||| ||||    
T  39402736 aaaatcaaatgacctataattgcatggatgaaaaacatatttaatccta 39402784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 20982591 - 20982523
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20982591 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 20982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 29957884 - 29957816
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29957884 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 29957816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 20101837 - 20101766
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  20101837 gattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcctaaa 20101766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 29958580 - 29958647
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29958580 gattagtaagttcagggatgaaaaatcaaacagcctataattacagggatgaaaaacatatttaagcc 29958647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 20983294 - 20983361
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  20983294 gattagtaagttcagggatgaaaaatcaaacggtctataattacagggatgaaaagcatatttaagcc 20983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 25624466 - 25624539
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaata 112  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||||||  |||||||||||| |||||    
T  25624466 gattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagccaaaata 25624539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 20103177 - 20103245
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||    
T  20103177 gattagtaagctcagggatgaaaaatctaatggcctataattacagggataaaaagcatatttaagcct 20103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 25623355 - 25623288
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||  ||||||||||||    
T  25623355 gattagtaagctcagggatgaaaaatcaaatggcctataattatagggatgaaatgcatatttaagcc 25623288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 24387418 - 24387348
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaa 109  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||  |||||||||||||||    
T  24387418 gattagtaagctcagggatgaaaaattaaatggcctataattgcagggatgaaatgcatatttaagcctaa 24387348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 24388289 - 24388358
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| |||||||||||||||||||  || ||||||| |||||||||||  ||||||||||||||    
T  24388289 gattagtaagctcagggatgaaaaatcaaattgcttataattgcagggatgaaatgcatatttaagccta 24388358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 21103148 - 21103088
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaag 104  Q
    |||||||||| |||||||||||||| |||||||||||||||     ||||||||| ||||||||||    
T  21103148 gattagtaagttcagggatgaaaaaccaaacggcctataat-----ggatgaaaagcatatttaag 21103088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 16367030 - 16366962
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| | |||||| ||||||||| |||| ||||||||||||||    
T  16367030 gattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaagacatatttaagcct 16366962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20983233 - 20983273
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  20983233 gattatccgggaagagggacgaactttcaaatgattagtaa 20983273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 10446899 - 10446832
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||||||    
T  10446899 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcc 10446832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 29957936 - 29957905
Alignment:
Q  16 ggaagagggacgaactttcaaatgattagtaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  29957936 ggaagagggacgaactttcaaatgattagtaa 29957905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 43236571 - 43236500
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||  ||||| |||||||| || ||||||| |||  ||||||| ||||||||    
T  43236571 gattagtaagttcagggatgaaatttcaaatggcctatatttgcagggataaaatgcatattttagcctaaa 43236500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 20911443 - 20911513
Alignment:
Q  36 aatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    ||||||||||||  |||||||  |||| ||||| | |||||| ||||||||| |||| |||||||||||||    
T  20911443 aatgattagtaacttcagggacaaaaattcaaatgacctatatttacagggacgaaagacatatttaagcc 20911513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 21370590 - 21370630
Alignment:
Q  66 aaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  21370590 aaacgacctataattacaaggatgaaatacatatttaagcc 21370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 38813621 - 38813554
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38813621 gattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcc 38813554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 52815730 - 52815662
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52815730 gattagtaagttcagggataaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 52815662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 52816456 - 52816524
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52816456 gattagtaagttcagagatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagcct 52816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 56556649 - 56556581
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  56556649 gattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagcct 56556581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 23455023 - 23454953
Alignment:
Q  37 atgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  23455023 atgattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 23454953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 38814360 - 38814428
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  38814360 gattagtaagttcagggatgaaaaatcaaacggcctaaaattacaaggatgaaaagcatatttaagcct 38814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 56557358 - 56557429
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  56557358 gattagtaagttcatggatgaaaaatcaaacggcctataattagagggatgaaaagcatatttaagcttaaa 56557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 38982629 - 38982691
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  38982629 gattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatattt 38982691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 23455722 - 23455790
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||| ||||||||||||| | |||||||||||||||||||||  |||||||||||||    
T  23455722 gattagtaagctcaggaatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 23455790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 53477113 - 53477185
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaat 111  Q
    |||||||||| |||| |||||||||||||| | ||||||||| ||| |||||||  |||||||||||||||||    
T  53477113 gattagtaagttcagagatgaaaaatcaaatgacctataattgcagagatgaaatgcatatttaagcctaaat 53477185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 55013122 - 55013189
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||| ||||||||| |||||||||||||    
T  55013122 gattagtaagctcagg-atgaaaaatcaaatagcctataattacatggatgaaaagcatatttaagcct 55013189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 54591613 - 54591678
Alignment:
Q  41 ttagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||| ||||||||||||||||||| |  |||||||| |||||||||||  ||||||||||||    
T  54591613 ttagtaagttcagggatgaaaaatcaaatgatctataattgcagggatgaaatgcatatttaagcc 54591678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 13336871 - 13336942
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||  ||||| | |||||| || |||||||||||  ||||||||||||||||    
T  13336871 gattagtaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatatttaagcctaaa 13336942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 22250051 - 22250121
Alignment:
Q  40 attagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    ||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||||||||||    
T  22250051 attagtaatttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcctaaa 22250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 38814299 - 38814339
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  38814299 gattatccgggaagagggacgaactttcaaatgattagtaa 38814339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 52816395 - 52816435
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  52816395 gattatccgggaagagggacgaactttcaaatgattagtaa 52816435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 53559704 - 53559772
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| ||||||||||||||    
T  53559704 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcct 53559772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 56556710 - 56556670
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  56556710 gattatccgggaagagggacgaactttcaaatgattagtaa 56556670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 56557297 - 56557337
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  56557297 gattatccgggaagagggacgaactttcaaatgattagtaa 56557337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 22249994 - 22249927
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagc 105  Q
    ||||||||||  ||||||||||||| ||||| | |||||| || ||||||||||| || |||||||||    
T  22249994 tgattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacttatttaagc 22249927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 54590209 - 54590146
Alignment:
Q  40 attagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaa 103  Q
    ||||||||| |||  |||||||||||||| | ||||||||| |||||||||||  |||||||||    
T  54590209 attagtaagttcaaagatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaa 54590146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 33294460 - 33294529
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||  ||||||| ||||| |||||  ||||||| || |||||| |||| |||||||||||||||    
T  33294460 gattagtaacttcagggacgaaaattcaaattgcctatatttgcagggaggaaagacatatttaagccta 33294529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 8287250 - 8287318
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| || |||||||||||    
T  8287250 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacctatttaagcct 8287318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 9254473 - 9254405
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||| ||||||||  ||||| |||||||| || |||||||||||  ||||||| |||||    
T  9254473 gattagtaagttcaaggatgaaatttcaaatggcctatatttgcagggatgaaatgcatattttagcct 9254405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 38813682 - 38813642
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  38813682 gattatccgggaagagggacgaactttcaaattattagtaa 38813642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 38982580 - 38982608
Alignment:
Q  19 agagggacgaactttcaaatgattagtaa 47  Q
    |||||||||||||||||||||||||||||    
T  38982580 agagggacgaactttcaaatgattagtaa 38982608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 52815791 - 52815751
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||| ||||||||||    
T  52815791 gattatccgggaagagggacgaactttcaagtgattagtaa 52815751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 27480780 - 27480848
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27480780 gattagtaaaatcaaggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 27480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 37284176 - 37284108
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  37284176 gattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcct 37284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 37289343 - 37289411
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  37289343 gattagtaagctcagggatgaaaaaccaaatggcctataattacagggatgaaaagcatatttaagcct 37289411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 27480054 - 27479987
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  27480054 gattagtaagctcagggatgaaaaatcaagcggcctataattgcagggatgaaaagcatatttaagcc 27479987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 22661424 - 22661362
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatattt 101  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  22661424 gattagtaagttcaaggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 22661362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 4227205 - 4227274
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  4227205 gattagtaagctcaaggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagccta 4227274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 38643617 - 38643548
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||    
T  38643617 gattagtaaggtcaaggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagccta 38643548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 12643167 - 12643099
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  12643167 gattagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 12643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 12930839 - 12930767
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaat 111  Q
    |||||||||| ||||||||||||||||||| | ||||||||| |||||||||||  |||||||||||||||||    
T  12930839 gattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagcctaaat 12930767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 45915841 - 45915909
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  45915841 gattagtaagcttagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcct 45915909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 45914593 - 45914522
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||| |||||||  ||||||||||||||||    
T  45914593 gattagtaagcttagggatgaaaaatcaaatggcctataattacagagatgaaatgcatatttaagcctaaa 45914522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 12929354 - 12929282
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaat 111  Q
    |||||||||| |||||||||||||||||||  ||||||| || |||||||||||  |||||||||||||||||    
T  12929354 gattagtaagttcagggatgaaaaatcaaatagcctatatttgcagggatgaaatgcatatttaagcctaaat 12929282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 4226192 - 4226121
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||| || |||| ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  4226192 gattagtaagctcatggttgaagaatcaaatggcctataattacagggatgaaatgcatatttaagcctaaa 4226121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 12644166 - 12644237
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||  ||||||||||| ||||    
T  12644166 gattagtaagctcagggatgaaaaatcaaatggcctgtaattatagggatgaaatgcatatttaagcttaaa 12644237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 7158298 - 7158229
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||| ||||||||||||||| |||||||||||  ||||||||||  ||||||||||||||    
T  7158298 gattagtaagttcatggatgaaaaatcaaatggcctataattgtagggatgaaatgcatatttaagccta 7158229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 37563671 - 37563739
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||||||| ||||||||| |||| ||||||||||||||    
T  37563671 gattagtaacttcagggacgaaaattcaaatggcctatatttacagggacgaaagacatatttaagcct 37563739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 47558097 - 47558029
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  |||||||||||||||||||  ||||||||||| || |||||||  |||||||||||||    
T  47558097 gattagtaaactcagggatgaaaaatcaaatagcctataattaaagagatgaaatgcatatttaagcct 47558029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 26825700 - 26825629
Alignment:
Q  36 aatgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    ||||||||||||  ||||||| ||||| ||||| | |||||| ||||||||| |||| ||||||||||||||    
T  26825700 aatgattagtaacttcagggacgaaaattcaaatgacctatatttacagggacgaaagacatatttaagcct 26825629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 43937961 - 43937890
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||  ||||||||||||| ||||| | |||||| ||||| ||| |||| |||||||||||||||||    
T  43937961 gattagtaacttcagggatgaaaattcaaatgacctatatttacaaggacgaaagacatatttaagcctaaa 43937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 15827982 - 15827914
Alignment:
Q  38 tgattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    ||||||||||  ||||||| ||||| ||||| |||||||| || |||||| |||| |||||||||||||    
T  15827982 tgattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagcc 15827914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 22661485 - 22661445
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  22661485 gattatccgggaagagggacgaactttcaaatgattagtaa 22661445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 27480719 - 27480759
Alignment:
Q  7 gattattctggaagagggacgaactttcaaatgattagtaa 47  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  27480719 gattatccaggaagagggacgaactttcaaatgattagtaa 27480759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 27480106 - 27480075
Alignment:
Q  16 ggaagagggacgaactttcaaatgattagtaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  27480106 ggaagagggacgaactttcaaatgattagtaa 27480075  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 37563421 - 37563350
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||  ||||||| ||||| ||||| |||||||| || ||||||  ||| |||||||||||||||||    
T  37563421 gattagtaaattcagggacgaaaattcaaatggcctatatttgcagggacaaaagacatatttaagcctaaa 37563350  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 20426718 - 20426764
Alignment:
Q  66 aaacggcctataattacagggatgaaaaacatatttaagcctaaata 112  Q
    ||||| ||| ||||| ||||||||||| |||||||||||||||||||    
T  20426718 aaacgacctctaattgcagggatgaaatacatatttaagcctaaata 20426764  T

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Target: scaffold0182 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 14410 - 14479
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagccta 108  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  14410 gattagtaagctcagggatgaaaaatcaaatggcctataattacaggggtgaaaagcatatttaagccta 14479  T

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Target: scaffold0182; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 13190 - 13133
Alignment:
Q  50 tcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||| |||||||||||||| || ||||| ||||||||||||||| |||||||||||||    
T  13190 tcagagatgaaaaatcaaatggtctatatttacagggatgaaaagcatatttaagcct 13133  T

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Target: scaffold0009 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 262474 - 262542
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||    
T  262474 gattagtaagttcagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagcct 262542  T

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Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 261068 - 260995
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaata 112  Q
    |||||||||  ||| ||||||||||||||| | ||||||||| |||||||||||  ||||||||||||||||||    
T  261068 gattagtaaattcatggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagcctaaata 260995  T

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Target: scaffold0347 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 13676 - 13609
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||    
T  13676 gattagtaagctcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcc 13609  T

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Target: scaffold0347; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 14626 - 14691
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaag 104  Q
    |||||||||| ||||||||||||||||||| |||||||||||  ||| ||||||  ||||||||||    
T  14626 gattagtaagctcagggatgaaaaatcaaatggcctataattgaaggaatgaaatgcatatttaag 14691  T

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Target: scaffold0018 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 73176 - 73109
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcc 106  Q
    |||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||    
T  73176 gattagtaagctcagggatgaaaagtcaaatggcccataattacagggatgaaaagcatatttaagcc 73109  T

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Target: scaffold1493 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 660 - 589
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaa 110  Q
    |||||||||| ||||||||||||||||||| | ||||||||| ||| |||||||  ||||||||||||||||    
T  660 gattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagcctaaa 589  T

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Target: scaffold1493; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 910 - 978
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcct 107  Q
    |||||||||  ||||||| ||||| ||||| |||| ||| ||||||||| |||| ||||||||||||||    
T  910 gattagtaacttcagggacgaaaattcaaatggccaatatttacagggacgaaagacatatttaagcct 978  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 10979 - 11052
Alignment:
Q  39 gattagtaaggtcagggatgaaaaatcaaacggcctataattacagggatgaaaaacatatttaagcctaaata 112  Q
    |||||||||  ||| ||| ||||| ||||| | |||||| || |||||| |||| |||||||||||||||||||    
T  10979 gattagtaacttcatggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcctaaata 11052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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